PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G15000.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 375aa    MW: 39669.6 Da    PI: 8.6585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G15000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11303348655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+ l+P+     +k  s +++L +Av++Ik Lq
  ONIVA04G15000.1 303 SIAERERRTRISEKLRKLQALVPNM----DKQTSTSDMLDLAVDHIKGLQ 348
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.215297347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15300363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-12301352No hitNo description
Gene3DG3DSA:4.10.280.108.0E-14302362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-13303353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-9303348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNPAPSRAPQ RQQRGGEMSA RYGGGLQFFA DAPPAGVEGG AATARTFFPV PGGGGEQQPP  60
ERAMRQQHYG GGGSGAAEIS LGHGHGHGHG HGGQHHFHQF GVEAKDGGGG GGGDQSGFLT  120
RHNSSPPGFF SSPVMDNGFS SSARPAGSSL GEVRHGAMSS SSSNNKKMKA PLSFASSRQG  180
SGGLSQISED GIPDLTDSIH GAAHHHGRSE ENVSTHDHVV RSFSSGGFSI GSWEDSNSIV  240
FSTSTGKSGA HGNDDIIATL SNYESQLVAP REMAGVEKYL QMQHDQVPFR VRAKRGCATH  300
PRSIAERERR TRISEKLRKL QALVPNMDKQ TSTSDMLDLA VDHIKGLQSQ LQTLKEDKEK  360
CTCSCKQASR NRPAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680390.0AK068039.1 Oryza sativa Japonica Group cDNA clone:J013131B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636683.10.0transcription factor bHLH129
TrEMBLA0A0E0H2F70.0A0A0E0H2F7_ORYNI; Uncharacterized protein
STRINGONIVA04G15000.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141882026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-44bHLH family protein