PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G12040.2

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 797aa MW: 87705.1 Da PI: 6.657

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G12040.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.7	4e-52	10	139	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeel+ +yLkkkv +k++l evi+evd++k+ePwdL++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk ONIVA04G12040.2 10 VPPGFRFHPTDEELLLYYLKKKVGFEKFDL-EVIREVDLNKIEPWDLQErcRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRDKC 102 69**************************.99**********963433332566******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + + + +++g++ktLvfy+grap+g+ktdW+mheyrle ONIVA04G12040.2 103 IRT-SYRKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 139 9.8999****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.24E-60	5	161	IPR003441	NAC domain
PROSITE profile	PS51005	58.09	10	161	IPR003441	NAC domain
Pfam	PF02365	7.0E-27	11	138	IPR003441	NAC domain
Pfam	PF08583	1.2E-6	378	418	IPR013892	Cytochrome c oxidase biogenesis protein Cmc1-like
Gene3D	G3DSA:3.20.20.70	6.3E-127	421	789	IPR013785	Aldolase-type TIM barrel
CDD	cd02933	1.45E-166	427	767	No hit	No description
SuperFamily	SSF51395	1.64E-108	427	786	No hit	No description
Pfam	PF00724	6.5E-77	428	763	IPR001155	NADH:flavin oxidoreductase/NADH oxidase, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0055114	Biological Process	oxidation-reduction process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0010181	Molecular Function	FMN binding
GO:0016491	Molecular Function	oxidoreductase activity

Sequence ? help Back to Top
Protein Sequence Length: 797 aa Download sequence Send to blast
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KVGFEKFDLE VIREVDLNKI EPWDLQERCR 60 IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGFWKATGRD KCIRTSYRKI GMRKTLVFYR 120 GRAPHGQKTD WIMHEYRLED ADDSQSASSE DGWVVCRVFK KKCFFKIGGG GGGEGSGGSQ 180 GGDVGGGHLA VSPPLGGGHA MAAASHYMHP HHQYHHHHHH AAAASPFYYT QMPPPAAAAP 240 PHAAYSHHVQ VQDLLTNHRP SADAGYDFSG LPAVDHHHHH PGLDVGSSDG GGGVAAGGAD 300 GDQAAAAAAA GSTDQQQWQA MDGFSNGGAG AAAAVQQQLG AMSSGQRGGE MDLWGYGRLT 360 FYIFGNASPS NLTQASYIIE AFQKCHVDHP VKKFFGECTD LKIKLDQCFR QETSRGAGER 420 EKMDPVPLFN PCEMGRFTFS HRIVLAPLTR ARSYGNLPQS HAILYYSQRA TKGGLLISEA 480 TGVSSDAPCT NTPGIWTKEQ VEAWKPVVDA VHAKGGIFFC QIWHVGRASD LEQEPISSTD 540 KPVEKNEDMD FPVPRRLAVE EIPDVINHFR IAARNAIDAG FDGVEVHGAH GFLLEQFMKD 600 GVNDRADEYG GSLQNRCRFA LEVIDAVSTE VGPDRVGFRI SPYISYYGCH DSDPDALGVY 660 MARELDRRGV LYCSVVEPEM VAATTVVDCE TTTTMSRRMM IPHRLHGMRE AFRRGMFMVG 720 GGYDRDAGNM AVASGYADMV VFGRLFLANP DLPRRFQLDA PLNKYDRATF YTHDPVVGYT 780 DYPFLDDDRE AMSDHTG

Sequence ? help Back to Top

Protein Sequence Length: 797 aa Download sequence Send to blast

MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KVGFEKFDLE VIREVDLNKI EPWDLQERCR  60
IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGFWKATGRD KCIRTSYRKI GMRKTLVFYR  120
GRAPHGQKTD WIMHEYRLED ADDSQSASSE DGWVVCRVFK KKCFFKIGGG GGGEGSGGSQ  180
GGDVGGGHLA VSPPLGGGHA MAAASHYMHP HHQYHHHHHH AAAASPFYYT QMPPPAAAAP  240
PHAAYSHHVQ VQDLLTNHRP SADAGYDFSG LPAVDHHHHH PGLDVGSSDG GGGVAAGGAD  300
GDQAAAAAAA GSTDQQQWQA MDGFSNGGAG AAAAVQQQLG AMSSGQRGGE MDLWGYGRLT  360
FYIFGNASPS NLTQASYIIE AFQKCHVDHP VKKFFGECTD LKIKLDQCFR QETSRGAGER  420
EKMDPVPLFN PCEMGRFTFS HRIVLAPLTR ARSYGNLPQS HAILYYSQRA TKGGLLISEA  480
TGVSSDAPCT NTPGIWTKEQ VEAWKPVVDA VHAKGGIFFC QIWHVGRASD LEQEPISSTD  540
KPVEKNEDMD FPVPRRLAVE EIPDVINHFR IAARNAIDAG FDGVEVHGAH GFLLEQFMKD  600
GVNDRADEYG GSLQNRCRFA LEVIDAVSTE VGPDRVGFRI SPYISYYGCH DSDPDALGVY  660
MARELDRRGV LYCSVVEPEM VAATTVVDCE TTTTMSRRMM IPHRLHGMRE AFRRGMFMVG  720
GGYDRDAGNM AVASGYADMV VFGRLFLANP DLPRRFQLDA PLNKYDRATF YTHDPVVGYT  780
DYPFLDDDRE AMSDHTG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1vji_A	1e-157	421	786	5	369	12-oxophytodienoate reductase (OPR1)
2q3r_A	1e-157	421	786	5	369	12-oxophytodienoate reductase 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073836	0.0	AK073836.1 Oryza sativa Japonica Group cDNA clone:J033069H04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0H1C4	0.0	A0A0E0H1C4_ORYNI; Uncharacterized protein
STRING	ONIVA04G12040.1	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	8e-77	NAC domain containing protein 70