PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G12040.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 834aa    MW: 92208.3 Da    PI: 6.8907
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G12040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.64.3e-52101391129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +ppGfrFhPtdeel+ +yLkkkv  +k++l evi+evd++k+ePwdL++  ++ +  ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk 
  ONIVA04G12040.1  10 VPPGFRFHPTDEELLLYYLKKKVGFEKFDL-EVIREVDLNKIEPWDLQErcRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRDKC 102
                      69****************************.99**************963433332566*********************************** PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      + + + +++g++ktLvfy+grap+g+ktdW+mheyrle
  ONIVA04G12040.1 103 IRT-SYRKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 139
                      **9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-605161IPR003441NAC domain
PROSITE profilePS5100558.0910161IPR003441NAC domain
PfamPF023657.5E-2711138IPR003441NAC domain
PfamPF085838.1E-8378430IPR013892Cytochrome c oxidase biogenesis protein Cmc1-like
Gene3DG3DSA:3.20.20.707.0E-127458826IPR013785Aldolase-type TIM barrel
SuperFamilySSF513951.83E-108464823No hitNo description
CDDcd029338.37E-167464804No hitNo description
PfamPF007247.2E-77465800IPR001155NADH:flavin oxidoreductase/NADH oxidase, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0010181Molecular FunctionFMN binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KVGFEKFDLE VIREVDLNKI EPWDLQERCR  60
IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGFWKATGRD KCIRTSYRKI GMRKTLVFYR  120
GRAPHGQKTD WIMHEYRLED ADDSQSASSE DGWVVCRVFK KKCFFKIGGG GGGEGSGGSQ  180
GGDVGGGHLA VSPPLGGGHA MAAASHYMHP HHQYHHHHHH AAAASPFYYT QMPPPAAAAP  240
PHAAYSHHVQ VQDLLTNHRP SADAGYDFSG LPAVDHHHHH PGLDVGSSDG GGGVAAGGAD  300
GDQAAAAAAA GSTDQQQWQA MDGFSNGGAG AAAAVQQQLG AMSSGQRGGE MDLWGYGRLT  360
FYIFGNASPS NLTQASYIIE AFQKCHVDHP VKKFFGECTD LKIKLDQCFR QEKALKRKAN  420
FEESKKFKEQ NKDNYVICPF KFQVNQDTRT SRGAGEREKM DPVPLFNPCE MGRFTFSHRI  480
VLAPLTRARS YGNLPQSHAI LYYSQRATKG GLLISEATGV SSDAPCTNTP GIWTKEQVEA  540
WKPVVDAVHA KGGIFFCQIW HVGRASDLEQ EPISSTDKPV EKNEDMDFPV PRRLAVEEIP  600
DVINHFRIAA RNAIDAGFDG VEVHGAHGFL LEQFMKDGVN DRADEYGGSL QNRCRFALEV  660
IDAVSTEVGP DRVGFRISPY ISYYGCHDSD PDALGVYMAR ELDRRGVLYC SVVEPEMVAA  720
TTVVDCETTT TMSRRMMIPH RLHGMREAFR RGMFMVGGGY DRDAGNMAVA SGYADMVVFG  780
RLFLANPDLP RRFQLDAPLN KYDRATFYTH DPVVGYTDYP FLDDDREAMS DHTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1vji_A1e-157458823536912-oxophytodienoate reductase (OPR1)
2q3r_A1e-157458823536912-oxophytodienoate reductase 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0672180.0AK067218.1 Oryza sativa Japonica Group cDNA clone:J013098J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0H1C30.0A0A0E0H1C3_ORYNI; Uncharacterized protein
STRINGONIVA04G12040.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-76NAC domain containing protein 70