PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G11850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 694aa MW: 77052 Da PI: 6.0294 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.7 | 1e-23 | 126 | 226 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++aee+ ++++++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + + ONIVA04G11850.1 126 FCKTLTASDTSTHGGFSVLRRHAEEClpqldmSQNPPC-QELVAKDLHGTEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RGE 216 99*****************************7556666.59************************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r ONIVA04G11850.1 217 SGELRVGVRR 226 999*****97 PP | |||||||
2 | Auxin_resp | 101.6 | 1.1e-33 | 252 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a k+++svGmRfkm+fe+++++err+sGt++g+ ++ + W +S W+sLk ONIVA04G11850.1 252 ASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEAKKQNLSVGMRFKMRFEGDEAPERRFSGTIIGIGSvpaMSKSPWADSDWKSLK 337 789*************************************************************987522267889********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.23E-45 | 110 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.4E-41 | 123 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.16E-21 | 124 | 226 | No hit | No description |
PROSITE profile | PS50863 | 11.533 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-21 | 126 | 226 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-20 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.7E-32 | 252 | 337 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 9.0E-6 | 536 | 583 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 27.62 | 547 | 639 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.22E-11 | 549 | 625 | No hit | No description |
Pfam | PF02309 | 1.2E-7 | 595 | 638 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence Send to blast |
MAAAMEMAAN PGGSGTCSDA LFRELWHACA GPLVTVPKRG ERVYYFPQGH MEQLEASTNQ 60 QLDQYLPMFN LPSKILCSVV NVELRAEADS DEVYAQIMLQ PEADQSELTS LDPELQDLEK 120 CTAHSFCKTL TASDTSTHGG FSVLRRHAEE CLPQLDMSQN PPCQELVAKD LHGTEWHFRH 180 IFRGQPRRHL LTTGWSVFVS SKRLVAGDAF IFLRGESGEL RVGVRRLMRQ VNNMPSSVIS 240 SHSMHLGVLA TASHAISTGT LFSVFYKPRT SRSEFVVSVN KYLEAKKQNL SVGMRFKMRF 300 EGDEAPERRF SGTIIGIGSV PAMSKSPWAD SDWKSLKVQW DEPSAIVRPD RVSPWELEPL 360 DASNPQPPQP PLRNKRARPP ASPSVVAELP PSFGLWKPPS EAAQTLSFSE PQRAREIFPS 420 IPASIFSASS HVEFNSKNEP SILSNQFYWS MRDSKTDSFS ASTNKARVER KQEPTTMGCR 480 LFGIEISSAV EEALPAATVS GVGYDQTVLS VDVDSDQISQ PSNGNKSNAP GTSSERSPLE 540 SQSRQVRSCT KVIMQGMAVG RAVDLTKLNG YGDLRSKLEE MFDIQGDLCP TLKRWQVVYT 600 DDEDDMMLVG DDPWDEFCSM VKRIYIYSYE EAKLLAPKSK LPVIGDTIKL SSMNSSHESV 660 DLDNHASGAR DSADWLQWRG LLPRVVIVAS CRSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 1 | 362 | 1 | 357 | Auxin response factor 1 |
4ldw_A | 0.0 | 1 | 362 | 1 | 357 | Auxin response factor 1 |
4ldw_B | 0.0 | 1 | 362 | 1 | 357 | Auxin response factor 1 |
4ldx_A | 0.0 | 1 | 362 | 1 | 357 | Auxin response factor 1 |
4ldx_B | 0.0 | 1 | 362 | 1 | 357 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064925 | 0.0 | AK064925.1 Oryza sativa Japonica Group cDNA clone:J013000N16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636800.1 | 0.0 | auxin response factor 9 isoform X3 | ||||
Swissprot | Q0JCZ4 | 0.0 | ARFI_ORYSJ; Auxin response factor 9 | ||||
TrEMBL | A0A0E0H189 | 0.0 | A0A0E0H189_ORYNI; Auxin response factor | ||||
STRING | ONIVA04G11850.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1082 | 36 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.4 | 0.0 | auxin response factor 1 |
Publications ? help Back to Top | |||
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