PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G10990.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 374aa    MW: 39967.1 Da    PI: 4.5134
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G10990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.46.1e-14133181355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++h   Er RR++++++fe L  l+P++     +K +Ka+i+e +++YIk+Lq
  ONIVA04G10990.1 133 KMHVLTERERRKEMKNKFEILHALIPNL----PEKTDKATIVEATINYIKNLQ 181
                      579999*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945130180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-16133195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-14133185No hitNo description
PfamPF000103.6E-11134181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-16134193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-11136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSQEGPNNHP QGTQETHDCP FTIATNTPLG STKMGYSDSR KSDENNTSSK PASPVVSSDV  60
VEIKETWENV VVADEEGEGG EDGFASDASE SKSKSSSDEI DYELLDLLAG ASEGCSGGNN  120
NDEVKNFAYA DHKMHVLTER ERRKEMKNKF EILHALIPNL PEKTDKATIV EATINYIKNL  180
QDKIHKMEML KVEREHAIAL ATAATATAAA SADTALQAPP PSEEENEEHD SVVAAATREM  240
ALADMVHAWE QQQEAAATGG SHGGHAVPPP PPAASLQTWT GPNMTASLTG DDGFITLSLP  300
HQGGQKNLVA GAVSVLERHH IDVVTATVSA SEQGDNLISL HCHLSPGSSS SQNLTPLDKF  360
KLAMSELMLW VISV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1072680.0AK107268.1 Oryza sativa Japonica Group cDNA clone:002-125-H08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635110.11e-175transcription factor bHLH95
TrEMBLA0A0E0H0X60.0A0A0E0H0X6_ORYNI; Uncharacterized protein
STRINGONIVA04G10990.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-17bHLH family protein