PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G10960.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 242aa    MW: 24530.8 Da    PI: 7.6742
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G10960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.9e-2062111255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae+Aa+a++aa+++++g
  ONIVA04G10960.1  62 KYRGVRRRP-WGKWAAEIRDP-----HraARVWLGTFATAEDAARAYDAAALRFRG 111
                      8********.**********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.9E-3261120IPR001471AP2/ERF domain
PROSITE profilePS5103225.6262119IPR001471AP2/ERF domain
CDDcd000185.64E-1862119No hitNo description
PfamPF008471.1E-1362111IPR001471AP2/ERF domain
SMARTSM003803.8E-3562125IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2262120IPR016177DNA-binding domain
PRINTSPR003671.3E-116374IPR001471AP2/ERF domain
PRINTSPR003671.3E-1185101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MALSEPDLAA ETEAIVSALT HVVAYGGGGP PPSEETAASA VTRTAPWRAD GARQGAVPAA  60
RKYRGVRRRP WGKWAAEIRD PHRAARVWLG TFATAEDAAR AYDAAALRFR GGRARLNFPE  120
DAAAADERRA TDAAAAAAAA SSAPAALLES QPGDVADCLD YSRILAGAPE RPTSSTVPDG  180
FFGGGGNGRF LHSWSIGTSP SSSGSGSGGA GGGGGGGGAP VRPLFHGGNG WEQRGDSAYN  240
GF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2161119463ATERF1
3gcc_A1e-2161119463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066320.0AL606632.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880432.11e-110dehydration-responsive element-binding protein 1C-like
TrEMBLA0A0E0H0X01e-166A0A0E0H0X0_ORYNI; Uncharacterized protein
STRINGONIVA04G10960.11e-166(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142992022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.13e-16related to AP2 6