PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G10650.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 829aa    MW: 93647 Da    PI: 6.891
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G10650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.72.8e-504595871129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtd el v+yLk+k+ gk+l++ ++++e+d+yk+ PwdLp k +++++++ewyfF++rd+ky++g+r+nr+t++gyWkatgkd++v
  ONIVA04G10650.1 459 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAVSELDLYKFAPWDLPeKsSLQSKDREWYFFCPRDRKYSSGSRTNRSTEAGYWKATGKDRPV 551
                      79****************************.89**************95357788999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +  ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle
  ONIVA04G10650.1 552 IY-NSQTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 587
                      **.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030163.9E-4253340IPR004263Exostosin-like
SuperFamilySSF1019416.93E-61447609IPR003441NAC domain
PROSITE profilePS5100556.488459609IPR003441NAC domain
PfamPF023656.1E-26460586IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005768Cellular Componentendosome
GO:0005802Cellular Componenttrans-Golgi network
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MRSSHQPLCT RAHQAAALLL VAATFFLTRL LDRSPLSAPP PPCAAPYSPW PHRDLRIYVY  60
AEDEVDGLRA LLRGRNDDVT AATCIKGQWG TQVKIHQLLL SSRFRTFDKD EADLFFVPTY  120
VKCVRMTGKL NDKEINQTYV KVVLSQMPYF RRSGGRDHIF VFPSGAGAHL FRSWATFLNR  180
SIILTPEGDR TDKRGISAFN TWKDIIIPGN VDDSMVKSDR LAVKPIPLTK RKYLANFLGR  240
AQGKVGRLQL VKLAKQYPDK LESPELKLSG PDKLGRIDYF KHLRNAKFCL APRGESSWTL  300
RFYESFFVEC VPVILSDEVE LPFQNVIDYT EVSIKWPASK IGPGLLEYLE SIPDGRVEEM  360
IGRGREIRCL WVYAADTERC SAMSAIMWEL QRKVRRFHQS AETFWLHNRS IVNRDLVEFH  420
EWRTPHHHPP SPLRGGAAFP SLADRHHQLL RPSMAKTSLP PGFRFHPTDV ELTVYYLKRK  480
LLGKHLRCNA VSELDLYKFA PWDLPEKSSL QSKDREWYFF CPRDRKYSSG SRTNRSTEAG  540
YWKATGKDRP VIYNSQTVGM KRTLVFHLGK PPRGDRTDWV MYEYRLEDKE LSASGVKLDA  600
CVLCKIFQKS GPGPKIGEQY GAPFNEDDWN EANGELSSFA FSVPPCALES SNGRLNTAGQ  660
QLAVSDNIGS SLDHCSETND KIAVGGCGTT SPSVPFDTIH TQQLAEIISC FSTDLLNSVS  720
RDGSLPDSTA DYDNDNEVSS DDGEAIFNEL DELDSQSDES ISNHCNSCGE DLIPPTLEVL  780
KTEQYLELND LSFSLADDPD PCNLLLTTNL SDQNHPELET SSNRKALRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-494516107169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0646460.0AK064646.1 Oryza sativa Japonica Group cDNA clone:002-114-D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697732.10.0PREDICTED: probable glucuronosyltransferase Os03g0107900
TrEMBLA0A0E0H0S40.0A0A0E0H0S4_ORYNI; Uncharacterized protein
STRINGOPUNC04G28460.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.49e-78NAC domain containing protein 82