PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G10490.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 516aa MW: 54228.6 Da PI: 10.5185

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G10490.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.8	4.2e-24	221	309	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY+ Y+ +vGF+vrk++ +ksk++geit+r+f Cs+eg+r++ k+ ++ + + +rtgC+a+l+++++k +k ev+ ++ HnH+l+ ONIVA04G10490.1 221 EFYRYYGWKVGFNVRKEYANKSKKTGEITSRKFACSREGYRANVKRG--NHMVPMPDSRTGCNAHLVIRRKKpGAKLEVYAFQPRHNHPLF 309 6****************************************9988..9999***************9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-20	221	309	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MSSPAEPPPP EHPPTPAPAP APASPPPHPA ASGNEAAAPP KPNPPITPAP GRNASAAPPS 60 GSPATAAAAA PVPSRKESGS TSAAAPAAAT RKASGVAAAT TGVLPRKPPG TTAPVAARNI 120 PATTAASRTA TRATTTTTAT SVSRRPAAAA AAVASRIPLR ATDATTTHAA SRNPLTGAAA 180 ATATATVAAV GRGGFRAAPT RPEEYTPRMG MEFESEHEAY EFYRYYGWKV GFNVRKEYAN 240 KSKKTGEITS RKFACSREGY RANVKRGNHM VPMPDSRTGC NAHLVIRRKK PGAKLEVYAF 300 QPRHNHPLFA TSCMPNPLQP NVVHWTTLLD AVTPPDLLMD GENIMDKSSG TTAKESKKKG 360 QKNKIQSRNC IEKGLRKKQK VHSEQPSEYA LLGGSQSGNM FQAFEGPPNM SPLGTQTPTY 420 KTYRGIDLSS PMGPISYDEM PSGLDPTFTT VLQPITLLRC QVAAHTTSKA NVKDYPISIR 480 SSIQQLLYII QLIMPNGAAI FPIGICSTGT VAQANL

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MSSPAEPPPP EHPPTPAPAP APASPPPHPA ASGNEAAAPP KPNPPITPAP GRNASAAPPS  60
GSPATAAAAA PVPSRKESGS TSAAAPAAAT RKASGVAAAT TGVLPRKPPG TTAPVAARNI  120
PATTAASRTA TRATTTTTAT SVSRRPAAAA AAVASRIPLR ATDATTTHAA SRNPLTGAAA  180
ATATATVAAV GRGGFRAAPT RPEEYTPRMG MEFESEHEAY EFYRYYGWKV GFNVRKEYAN  240
KSKKTGEITS RKFACSREGY RANVKRGNHM VPMPDSRTGC NAHLVIRRKK PGAKLEVYAF  300
QPRHNHPLFA TSCMPNPLQP NVVHWTTLLD AVTPPDLLMD GENIMDKSSG TTAKESKKKG  360
QKNKIQSRNC IEKGLRKKQK VHSEQPSEYA LLGGSQSGNM FQAFEGPPNM SPLGTQTPTY  420
KTYRGIDLSS PMGPISYDEM PSGLDPTFTT VLQPITLLRC QVAAHTTSKA NVKDYPISIR  480
SSIQQLLYII QLIMPNGAAI FPIGICSTGT VAQANL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855155	0.0	CR855155.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0525E10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880889.1	1e-151	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880890.1	1e-151	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880891.1	1e-151	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880892.1	1e-151	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880893.1	1e-151	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880894.1	1e-151	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880895.1	1e-151	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880896.1	1e-151	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880897.1	1e-151	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880898.1	1e-151	protein FAR1-RELATED SEQUENCE 12
TrEMBL	A0A0E0H0Q4	0.0	A0A0E0H0Q4_ORYNI; Uncharacterized protein
STRING	ONIVA04G10490.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15895	9	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-17	FAR1 family protein