PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G09510.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 529aa    MW: 55232.7 Da    PI: 7.9189
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G09510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.91.2e-17144233186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +Wt+  +  L++ ++++ e+l+rg+l++ +We+v++++     +    +s +qCk+k++nl+kryk + ++  +  + ++s++p+f+++e
  ONIVA04G09510.1 144 EWTDGAISSLLDSYTDRFEQLNRGNLRGRDWEDVAAAVsdgqGKSSGGKSVEQCKNKIDNLKKRYKVECQRLAGSGASAVSHWPWFKKME 233
                      5*************************************6655334446899***************888887777677888********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.1E-20142235No hitNo description
Gene3DG3DSA:3.40.1160.103.7E-66288522IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536339.56E-50290522IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042545.74E-110293523No hitNo description
PfamPF006969.9E-14293502IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0016740Molecular Functiontransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MASCDDDFGL LGDGPVPEEE AAAAAASSQA APPPPQQQAQ AFCFGDAASV AGAGAGVGPF  60
APMGQEEGNH SAERGKAAAA AAHHSKRGRD RAEEFSDGGE YCSYLNSGGG GGGAGKKGRG  120
GGGGGGGGGG VAAGSSEYRK DREEWTDGAI SSLLDSYTDR FEQLNRGNLR GRDWEDVAAA  180
VSDGQGKSSG GKSVEQCKNK IDNLKKRYKV ECQRLAGSGA SAVSHWPWFK KMEQIVGNSS  240
SPASSKALVA SDDDNKPRQP QQHSSKRHAP SGSSTPTFGG SSRLAPPSNP KWKRVLLKIG  300
GTALAGAPPQ NVDPKVIMLI AREVQVACRH GVEVSIVVGG RNIFCGDTWV SATGTDRAST  360
YSIGMMASVM NAVLLQASLE KIGVETRVQT ALMMQEVAEP YIRRRAIRHL EKGRVVIFAG  420
IGAGIGNPLF TTDTAAALRA SENVVLKGTA GDDDYGCPPR GNNNPPFEHI SFRELAARGF  480
SRMDMTAITC CQENNIPVVI FNMLEPGNIS KAIRGDQVGT LVDQSGRIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A8e-5726952229279Uridylate kinase
3nwy_B8e-5726952229279Uridylate kinase
3nwy_C8e-5726952229279Uridylate kinase
3nwy_D8e-5726952229279Uridylate kinase
3nwy_E8e-5726952229279Uridylate kinase
3nwy_F8e-5726952229279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087570.0AK108757.1 Oryza sativa Japonica Group cDNA clone:002-150-G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637195.10.0uncharacterized protein LOC4335753
TrEMBLA0A0E0H0C10.0A0A0E0H0C1_ORYNI; Uncharacterized protein
STRINGONIVA04G09510.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-148Trihelix family protein