PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G07960.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 383aa    MW: 40039.2 Da    PI: 5.1513
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G07960.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.34.8e-07136211655
                      HHHHHHHHHHHHHHHHHHHCTSCC.C............................TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPk.as.........................kapskKlsKaeiLekAveYIksLq 55 
                         Er+RR r+++++ eLr l+P+                               +  ++Ka+i   Av Y+k+Lq
  ONIVA04G07960.2 136 IVSERKRRVRMKEKLYELRALVPNiTKvrtqcliarvgvamaappcaiantsLMIAWQMDKASIIADAVVYVKDLQ 211
                      568*********************666*********************9997667777*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.11E-12121162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-14127226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.66E-8128212No hitNo description
PROSITE profilePS5088812.493130210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-4136211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-5136216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-12192225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEHHHLLLQL SPPPPPPPLP AAHLMMSPSF FDAGVFADVG GDWMEDLMHL GELFGVGVGG  60
DDDDNGGVDG GVGGGDDRMQ EWQNNCEGAG SPDHQPSCGD GDGDGDGDVS PRDGELGDGD  120
GDNSATRKRR DRSKTIVSER KRRVRMKEKL YELRALVPNI TKVRTQCLIA RVGVAMAAPP  180
CAIANTSLMI AWQMDKASII ADAVVYVKDL QAHARKLKEE VAALEEGRPI RPPPPSAAAQ  240
RPQRQPRRVA AAAAQLARAA DAAAVTTAAA APHGARVAHV GAAQVGEGRF FVTVECEPAA  300
AAARGGGGGV AAPVCAAVES LSCFTVESST VGCSPDRVVA TLTLKVSEAE EDVSAISECT  360
VKLWVMAALL KEGFRPQPTV QIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127142KRRDRSKTIVSERKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629770.0AL662977.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634338.11e-169transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A0E0GZT00.0A0A0E0GZT0_ORYNI; Uncharacterized protein
STRINGONIVA04G07960.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.18e-21FER-like regulator of iron uptake