PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G06980.3

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 419aa MW: 43290.5 Da PI: 6.5847

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G06980.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.8	5.3e-10	247	294	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq ONIVA04G06980.3 247 SHSLAERVRRERISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 294 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.89E-17	241	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.97E-11	241	298	No hit	No description
PROSITE profile	PS50888	15.612	243	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-16	243	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-7	247	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-9	249	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MADEHFFPAG DYFSTSSSGA GTGGAGALLP AAAYGTMTMM PPWAVAAAEQ MMMMAPAAAA 60 AEFDSALSSL VSSPQGGGGG DEMAAIGDLI GRLGSICSHG GASANNSCYS TPLSSPPRAA 120 PPPPFRGYAA AGGRLSRVSS SKSLGGAAAA LDSSEADMNP TTAAAADQPS KPSAAAARKR 180 KSSAKPKASS SSLPTATATT NASPKRSKVA AGAGDDGDGD ADAAEEKPEP AKDYIHVRAR 240 RGQATDSHSL AERVRRERIS ERMKLLQSLV PGCNKITGKA LMLDEIINYV QSLQRQVEFL 300 SMKLATMNPQ LDFDSHYMPS KDMSHMPVPA YPSGDPTTTT AFSYTGSPAT ADPFTVYNCW 360 ELDLHTAMQM GATPGLSQDV PIATMAPSPS PLPHHPPLHG FYGGQQQQGT TVNHMKAEP

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MADEHFFPAG DYFSTSSSGA GTGGAGALLP AAAYGTMTMM PPWAVAAAEQ MMMMAPAAAA  60
AEFDSALSSL VSSPQGGGGG DEMAAIGDLI GRLGSICSHG GASANNSCYS TPLSSPPRAA  120
PPPPFRGYAA AGGRLSRVSS SKSLGGAAAA LDSSEADMNP TTAAAADQPS KPSAAAARKR  180
KSSAKPKASS SSLPTATATT NASPKRSKVA AGAGDDGDGD ADAAEEKPEP AKDYIHVRAR  240
RGQATDSHSL AERVRRERIS ERMKLLQSLV PGCNKITGKA LMLDEIINYV QSLQRQVEFL  300
SMKLATMNPQ LDFDSHYMPS KDMSHMPVPA YPSGDPTTTT AFSYTGSPAT ADPFTVYNCW  360
ELDLHTAMQM GATPGLSQDV PIATMAPSPS PLPHHPPLHG FYGGQQQQGT TVNHMKAEP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO681395	0.0	FO681395.1 Oryza rufipogon (W1943) Awn-1(An-1) full-length cDNA sequence: OR_W1943_cDNA_An-1, PCR product.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635665.2	0.0	LOW QUALITY PROTEIN: transcription factor bHLH62
Swissprot	Q9SRT2	5e-63	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A0E0GZG1	0.0	A0A0E0GZG1_ORYNI; Uncharacterized protein
STRING	ORUFI04G09760.1	0.0	(Oryza rufipogon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-48	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]