PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G06980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 476aa MW: 49483.9 Da PI: 7.2128 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.5 | 6.4e-10 | 247 | 294 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq ONIVA04G06980.1 247 SHSLAERVRRERISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 294 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.2E-17 | 241 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.48E-11 | 241 | 298 | No hit | No description |
PROSITE profile | PS50888 | 15.612 | 243 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-16 | 243 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-7 | 247 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-9 | 249 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MADEHFFPAG DYFSTSSSGA GTGGAGALLP AAAYGTMTMM PPWAVAAAEQ MMMMAPAAAA 60 AEFDSALSSL VSSPQGGGGG DEMAAIGDLI GRLGSICSHG GASANNSCYS TPLSSPPRAA 120 PPPPFRGYAA AGGRLSRVSS SKSLGGAAAA LDSSEADMNP TTAAAADQPS KPSAAAARKR 180 KSSAKPKASS SSLPTATATT NASPKRSKVA AGAGDDGDGD ADAAEEKPEP AKDYIHVRAR 240 RGQATDSHSL AERVRRERIS ERMKLLQSLV PGCNKITGKA LMLDEIINYV QSLQRQVEFL 300 SMKLATMNPQ LDFDSHYMPS KDMSHMPVPA YPSGDPTTTT AFSYTGSPAT ADPFTVYNCW 360 ELDLHTAMQM GATPGLSQDV PIATMAPSPS PLPHHPPLHG FYGGQQQQGT TVGPSCTGKE 420 KVFQGLTFSR CSVILFRQRT CFDVVMFVGQ RSICVVCLEM ARQGSCVTFV CAGCMP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO681395 | 0.0 | FO681395.1 Oryza rufipogon (W1943) Awn-1(An-1) full-length cDNA sequence: OR_W1943_cDNA_An-1, PCR product. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635665.2 | 0.0 | LOW QUALITY PROTEIN: transcription factor bHLH62 | ||||
Swissprot | Q9SRT2 | 2e-61 | BH062_ARATH; Transcription factor bHLH62 | ||||
TrEMBL | A0A0E0GZF9 | 0.0 | A0A0E0GZF9_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G06980.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12547 | 28 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 5e-48 | bHLH family protein |
Publications ? help Back to Top | |||
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