PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G06840.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 326aa    MW: 36407.6 Da    PI: 4.8317
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G06840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like27.75.9e-09119165455
          G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      l Wtp L ++F++a+e LG + +      l +m+v+ + ++++  HLQk+Rl
  ONIVA04G06840.1 119 LMWTPHLQKKFLHALEILG-EGQ----ISLMIMDVDNIDRKQISTHLQKHRL 165
                      78****************5.542....34789*******************7 PP
2Response_reg27.22e-101597282
                     EEESSSHHHHHHHHHHHH.HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS
     Response_reg  2 livdDeplvrellrqale.kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge 82
                     +++d+++  ++  ++++  + ++  v++++++ +al+ l+++   ++l+l D++m +m+G+e+lk  re +++++ i v+++++
  ONIVA04G06840.1 15 MVIDEDKCHADSTCSMICtQLNF-CVTVFTSPIKALDFLQNQAegVHLVLADVQMEEMNGFEFLKVARELHKSIQAISVGDKST 97
                     6776666666665555554999*.***************999999********************9999999999998888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.69E-111290IPR011006CheY-like superfamily
PROSITE profilePS5011011.51913137IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.3E-111492No hitNo description
PfamPF000726.6E-71597IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.93E-81590No hitNo description
SuperFamilySSF466895.11E-10113169IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-10114169IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-8119165IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAQNEGIPNG TLSAMVIDED KCHADSTCSM ICTQLNFCVT VFTSPIKALD FLQNQAEGVH  60
LVLADVQMEE MNGFEFLKVA RELHKSIQAI SVGDKSTCAN EMNSFPENQK DGTKRKYYLM  120
WTPHLQKKFL HALEILGEGQ ISLMIMDVDN IDRKQISTHL QKHRLPLKKK LSKASFTKGS  180
NEDTSNPSAK NHLTCRTMTL QPHPYTNQPA ETTMQIHSED VEHDDVYDAM RRALQDGTAF  240
DESKYSSDPF SNEDEDVVGD GYADKANAID SSGDHYQVAV VLTTPHNVDY TQEIMNKVTT  300
SDDVQVTRGG KATVSRLVDY SDSDSD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691407.11e-121PREDICTED: two-component response regulator ORR29-like
SwissprotQ7XKS90.0ORR28_ORYSJ; Two-component response regulator ORR28
TrEMBLA0A0E0GZE10.0A0A0E0GZE1_ORYNI; Uncharacterized protein
STRINGONIVA04G06840.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.11e-09G2-like family protein