PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G06690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 430aa MW: 46756.2 Da PI: 10.0278 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.8 | 2.3e-14 | 24 | 119 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 4 vltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 vl+ps+ k +++ + a++ gg ++ t ++ ++ g+ W+v + +r ++gr +l++GW eF+ a+gL +g fvv+++ g ++ l ONIVA04G06690.1 24 VLVPSSFRK---MRICDELAAQLgvgvgGGGAPRAATARVASPLGKAWDVGV-VRDGDGRAFLGRGWAEFAAAHGLGVGWFVVLRHGG-GGGVL 112 555555444...568888887779999955566888****************.688888899***********************866.78878 PP EEEEE-S CS B3 93 vvkvfrk 99 v +f++ ONIVA04G06690.1 113 AVEAFDT 119 9988876 PP | |||||||
2 | B3 | 51.3 | 2e-16 | 155 | 234 | 14 | 96 |
T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + +++p kf++++ g++ +s + ++ ++ g+sW+v+l +k +++++l++GW +F + +g+ gD+v+F+++g+ f +++v ONIVA04G06690.1 155 DKMRIPDKFVRDYiTGENLNSNMAIILSPLGKSWRVEL--DKDQSGVFLGGGWLQFLSFHGISRGDVVIFRYEGNLVF--KISV 234 5699**********555567889999************..*******************************9986666..5555 PP | |||||||
3 | B3 | 77.6 | 1.3e-24 | 322 | 417 | 1 | 84 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.............-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.............rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfv 80 ++k++++++vl++++l+l ++f+e++g+ +e+s++l++ d+++ rsWev+ r+++++ y+l++GW++F+++ng+++gD++ ONIVA04G06690.1 322 WIKKEINEYVLERCILSLARTFCESIGLAEESSIKLMMVDTTStqgdqggssssssRSWEVTG--RRYKDAcYLLGAGWRRFCEDNGVRSGDVC 413 789*************************************99999******************..9999999********************** PP EEEE CS B3 81 vFkl 84 vF++ ONIVA04G06690.1 414 VFTV 417 **95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0081 | 21 | 120 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-12 | 22 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-12 | 23 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.22E-12 | 23 | 118 | No hit | No description |
Pfam | PF02362 | 1.3E-11 | 23 | 118 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.953 | 65 | 120 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-19 | 138 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-20 | 139 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.775 | 142 | 238 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.87E-18 | 143 | 235 | No hit | No description |
SMART | SM01019 | 5.4E-15 | 145 | 238 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-14 | 155 | 230 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.65E-14 | 318 | 428 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-16 | 319 | 428 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.801 | 322 | 430 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-14 | 322 | 418 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-4 | 323 | 428 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.96E-7 | 327 | 416 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MGSRGDHGGG GGGRGAARAT QLKVLVPSSF RKMRICDELA AQLGVGVGGG GAPRAATARV 60 ASPLGKAWDV GVVRDGDGRA FLGRGWAEFA AAHGLGVGWF VVLRHGGGGG VLAVEAFDTT 120 CCLRVFGAPP AEAGRATDTS RKPQFLTVLL PGIMDKMRIP DKFVRDYITG ENLNSNMAII 180 LSPLGKSWRV ELDKDQSGVF LGGGWLQFLS FHGISRGDVV IFRYEGNLVF KISVFGPNGR 240 QKDFKAKGIS IHQGTGEQQE APSFSRRKCN NKKKSRFGED DGNQQEMPCS RKGSGNKGRT 300 SDRETKRMRK TRSVYEIGPR SWIKKEINEY VLERCILSLA RTFCESIGLA EESSIKLMMV 360 DTTSTQGDQG GSSSSSSRSW EVTGRRYKDA CYLLGAGWRR FCEDNGVRSG DVCVFTVLDT 420 TLWRVDIERC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL662963 | 1e-159 | AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence. | |||
GenBank | AP014960 | 1e-159 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 1e-159 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855108 | 1e-159 | CR855108.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0111I14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881011.1 | 0.0 | putative B3 domain-containing protein Os04g0346900 | ||||
Swissprot | Q7XS75 | 0.0 | Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900 | ||||
TrEMBL | A0A0E0GZC2 | 0.0 | A0A0E0GZC2_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G06690.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 3e-17 | B3 family protein |