PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G06040.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 196aa    MW: 21057.8 Da    PI: 6.8857
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G06040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY23.98.6e-082231535
                     -TT-SS-EEEEEE-ST.T---E CS
             WRKY 15 vkgsefprsYYrCtsa.gCpvk 35
                      kg+++pr+YYrCt a gC++ 
  ONIVA04G06040.1  2 AKGNPCPRAYYRCTVAvGCSAA 23
                     59*************9999874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508119.867122IPR003657WRKY domain
SuperFamilySSF1182909.42E-5223IPR003657WRKY domain
PfamPF031062.5E-4223IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-4223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MAKGNPCPRA YYRCTVAVGC SAAVAKSSSA NAATTEMLEL LRDFSDYSSF NSDISGELER  60
LAAAVTPRSD ASRVVAVDLN SGNSSSSRLT TTTPPPLLQL GRWQALPFIV PTGRCASLAA  120
IVKEISGRRA SPPWTSAAGD AVIPSYENHV TEVSTCVKHS SSHTDIDCLR LSITTPFHDY  180
DVITLIDKII YPLFWC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0GZ421e-141A0A0E0GZ42_ORYNI; Uncharacterized protein
STRINGONIVA04G06040.11e-142(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2342744