PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G03690.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 373aa    MW: 39549.5 Da    PI: 6.2828
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G03690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.62.6e-1488139155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  ONIVA04G03690.1  88 QRMTHIAVERNRRRQMNEYLAILRSLMPEP---YVQRGDQASIVGGAIEFVKELE 139
                      79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.16E-1486143No hitNo description
SuperFamilySSF474592.22E-1786156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.2587138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-1488152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1188139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1193144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MSTLVDALCA PCSDTALIYD TFNASAAASF LFDNAAAFCD ADILGATATG EKEATSSAAA  60
AAADAAPPRK KRRRRAKSCK SREETETQRM THIAVERNRR RQMNEYLAIL RSLMPEPYVQ  120
RGDQASIVGG AIEFVKELEQ QLQSLEAQKR TLLPHHKARC DDATPMHNAS GSNVGAGGCM  180
EPTTTTSNCS SSVTEDAPSA DAPPFAQFFA YPQYVWCHSP RDSTTTTTAA SASASASASS  240
SSPATVAAAL QSEHRSGLAD IEVSLVETHA SVRVMSPRRP GQLLKMIAGL QALRLTVLHL  300
NVTTLDSLVL YTLSVKVEEG CSLTTVDDIA AAVHHVLCIV DAEAAASEHL LAAGQLATTA  360
TAVAKRELAT YMY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16874RKKRRRR
26974KKRRRR
38899RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0606950.0AK060695.1 Oryza sativa Japonica Group cDNA clone:001-030-D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623756.10.0transcription factor bHLH96
TrEMBLA0A0E0GY750.0A0A0E0GY75_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NJH30.0A0A0E0NJH3_ORYRU; Uncharacterized protein
TrEMBLA2X8H80.0A2X8H8_ORYSI; Uncharacterized protein
STRINGORUFI02G30170.10.0(Oryza rufipogon)
STRINGONIVA04G03690.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-58bHLH family protein