PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA04G02900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 183aa MW: 18788 Da PI: 6.9728 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 107.2 | 2.6e-33 | 51 | 130 | 3 | 78 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaess 78 k ++s++h+kv gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ +++++ +ss ONIVA04G02900.1 51 RKSPSSSDRHSKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVTPEEAPpaavAIGSS 130 577899*********************************************************66666333222211222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.4E-28 | 55 | 130 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 25.848 | 56 | 110 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence Send to blast |
MASSSDLILY NLVPAQPLNP SAIPNPNPDL SIAAAEPPSS DGATPRRVRP RKSPSSSDRH 60 SKVAGRGRRV RIPAMVAARV FQLTRELGHR TDGETIEWLL RQAEPSIIAA TGTGVTPEEA 120 PPAAVAIGSS SVAAAAAAAG HGGAFVHVPY YTALLMQPPN ADEPPMASAA SASGTTAADE 180 NNN |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 45 | 51 | RRVRPRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL607008 | 0.0 | AL607008.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026E15, complete sequence. | |||
GenBank | AL662965 | 0.0 | AL662965.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0040D17, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633587.1 | 1e-126 | transcription factor PCF1 | ||||
Swissprot | O23875 | 1e-126 | PCF1_ORYSJ; Transcription factor PCF1 | ||||
TrEMBL | A0A0D3FSW4 | 1e-126 | A0A0D3FSW4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZHC3 | 1e-126 | A0A0D9ZHC3_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GXY2 | 1e-126 | A0A0E0GXY2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0P5Q7 | 1e-126 | A0A0E0P5Q7_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1PJA9 | 1e-126 | I1PJA9_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM04G03150.1 | 1e-126 | (Oryza glumipatula) | ||||
STRING | ORUFI04G04370.1 | 1e-126 | (Oryza rufipogon) | ||||
STRING | ONIVA04G02900.1 | 1e-126 | (Oryza nivara) | ||||
STRING | ORGLA04G0027800.1 | 1e-126 | (Oryza glaberrima) | ||||
STRING | OBART04G03730.1 | 1e-126 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14172 | 26 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69690.1 | 8e-28 | TCP family protein |