PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G01430.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 184aa    MW: 20159.1 Da    PI: 9.2906
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G01430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.92.2e-17953145
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     k+i n   r v fskRr+ ++KKA+ELS+LC+++vav ++s+ gk
  ONIVA04G01430.1  9 KPIANRKARDVCFSKRRQVVIKKANELSILCGVNVAVAVLSPAGK 53
                     6899**************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-22160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-21175IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.983161IPR002100Transcription factor, MADS-box
CDDcd001201.59E-22258No hitNo description
PRINTSPR004042.4E-14323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-191156IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MRRGKVKIKP IANRKARDVC FSKRRQVVIK KANELSILCG VNVAVAVLSP AGKPFFFGCP  60
TVQAVTRRLL GVGPSNPTMG DGGNGDETDI VHELNLKYQK LQQENEVEKK KNQRGQDVRL  120
ASDVNALGLH ELEAFDSNFN VIDDIVDSND VVKNAKQTAE PQTQMSVALT LQFMLDGQSI  180
APSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0GXG11e-132A0A0E0GXG1_ORYNI; Uncharacterized protein
STRINGONIVA04G01430.11e-133(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2310166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.17e-20AGAMOUS-like 29