PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G43980.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 388aa MW: 41767.8 Da PI: 7.2789

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G43980.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.5	8.8e-31	200	258	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY eHnh+ ONIVA03G43980.1 200 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYAAEHNHP 258 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	33.017	194	260	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.8E-30	197	260	IPR003657	WRKY domain
SuperFamily	SSF118290	2.75E-26	198	260	IPR003657	WRKY domain
SMART	SM00774	1.8E-37	199	259	IPR003657	WRKY domain
Pfam	PF03106	1.1E-25	201	258	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MDMMEEEAAN AATAQAAAAG DLADVVARAN ARAFLVSTPH HHPSPLHPLP PPPPMPQAPH 60 QYYPAPQITI PYHHHHHGEL RRPTTIAYTD APVPFETAGP PSTVVDSYHH LTPGDAGYGM 120 PRPLALQISQ HALCGGGDVV MGGGGAGAAD DGEEAIRISP LTPSAHHQMM KRKNEVKKVV 180 CIPAPPATSS RGGGGEVIPS DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CMARKQVERS 240 RSDPNMLVIT YAAEHNHPWP MQRNVLAGYA RSHHSTHATA SSSRHKQQQQ QQTNQLQPAL 300 ITSSSSSSSS PFNLYADVVL GGQQASMMMT TEGAGAGLGI QPSAADEVFA ELEELEPDNP 360 TMINANMQVY STTSRPGVSS YDHQWHKF

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MDMMEEEAAN AATAQAAAAG DLADVVARAN ARAFLVSTPH HHPSPLHPLP PPPPMPQAPH  60
QYYPAPQITI PYHHHHHGEL RRPTTIAYTD APVPFETAGP PSTVVDSYHH LTPGDAGYGM  120
PRPLALQISQ HALCGGGDVV MGGGGAGAAD DGEEAIRISP LTPSAHHQMM KRKNEVKKVV  180
CIPAPPATSS RGGGGEVIPS DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CMARKQVERS  240
RSDPNMLVIT YAAEHNHPWP MQRNVLAGYA RSHHSTHATA SSSRHKQQQQ QQTNQLQPAL  300
ITSSSSSSSS PFNLYADVVL GGQQASMMMT TEGAGAGLGI QPSAADEVFA ELEELEPDNP  360
TMINANMQVY STTSRPGVSS YDHQWHKF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	3e-24	173	260	2	79	Disease resistance protein RRS1
5w3x_D	3e-24	173	260	2	79	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109795	0.0	AK109795.1 Oryza sativa Japonica Group cDNA clone:002-147-E06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630180.1	0.0	uncharacterized protein LOC4334831
Swissprot	O64747	5e-55	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	A0A0E0GWW6	0.0	A0A0E0GWW6_ORYNI; Uncharacterized protein
STRING	ONIVA03G43980.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13466	28	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	1e-54	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]