PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G43890.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 400aa MW: 43692.6 Da PI: 9.4529 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.9 | 2.3e-33 | 56 | 110 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl ONIVA03G43890.2 56 KPRLRWTVELHDRFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 110 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.876 | 53 | 113 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-32 | 53 | 111 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.33E-16 | 55 | 112 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.6E-24 | 56 | 111 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.5E-7 | 58 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.1E-24 | 146 | 192 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MFPSSSPSPS PSSSKKQQQL SGGVGVGGAA AAASSNDRPP LCVQGDSGLV LTTDPKPRLR 60 WTVELHDRFV DAVTQLGGPD KATPKTIMRV MGVKGLTLYH LKSHLQKFRL GKQHKDFNDH 120 SVKDAMDMQR NAASSSGIMG RSMNDVHVNE ALRMKMEVQR RFHEQLEVQK HLQMRVEAQG 180 KYMQTILEKA YQAISSSGDC ATWHAGYKSL GSQAVLDIGS SMSFPSLQDD LQLYGGSHLD 240 HLHQQHEQME IRPSIDTFLA FNYSSSTGKS PMVWPGADDG GGEPAKISGD HQLQTAAPAT 300 TTMMMEAITM SGGDSMGSKG FEGQMSSKLD MRSPPPQQTA LPVGSERMSS PIVGAKARNI 360 SYGRVKSKEE ERSELAFLVR EIRNLMAGNR DIVILKIHRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-18 | 56 | 112 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-18 | 56 | 112 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-18 | 56 | 112 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-18 | 56 | 112 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK119588 | 0.0 | AK119588.1 Oryza sativa Japonica Group cDNA clone:002-117-C12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881808.1 | 0.0 | myb family transcription factor APL isoform X2 | ||||
Swissprot | Q9SAK5 | 5e-84 | APL_ARATH; Myb family transcription factor APL | ||||
TrEMBL | A0A0E0GWU2 | 0.0 | A0A0E0GWU2_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G43890.1 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79430.2 | 3e-83 | G2-like family protein |
Publications ? help Back to Top | |||
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