PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G43890.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 515aa MW: 55220.1 Da PI: 10.0564

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G43890.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.4	3.3e-33	56	110	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl ONIVA03G43890.1 56 KPRLRWTVELHDRFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 110 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.876	53	113	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.9E-32	53	111	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.4E-16	55	112	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	56	111	IPR006447	Myb domain, plants
Pfam	PF00249	3.5E-7	58	108	IPR001005	SANT/Myb domain
Pfam	PF14379	4.4E-24	146	192	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
MFPSSSPSPS PSSSKKQQQL SGGVGVGGAA AAASSNDRPP LCVQGDSGLV LTTDPKPRLR 60 WTVELHDRFV DAVTQLGGPD KATPKTIMRV MGVKGLTLYH LKSHLQKFRL GKQHKDFNDH 120 SVKDAMDMQR NAASSSGIMG RSMNDVHVNE ALRMKMEVQR RFHEQLEVQK HLQMRVEAQG 180 KYMQTILEKA YQAISSSGDC ATWHAGYKSL GSQAVLDIGS SMSFPSLQDD LQLYGGSHLD 240 HLHQQHEQME IRPSIDTFLA FNYSSSTGKS PMVWPGADDG GGEPAKISGD HQLQTAAPAT 300 TTMMMEAITM SGGDSMGSKG FEGQMSSKLD MRSPPPQQTA LPVGSERMSS PIVGAKARNI 360 SYGRVKSKEE ERSELAFLVR EIRNLMAGNR DIVILKIHPG PTCQSLTLSF TPHLSTSLQN 420 PHSSRFLTLR TAAGRSDEGG GGARDDVGRS GRQQRAPATT GAWDGGERSL GLRGRRSSGQ 480 QRTEFGAAGG GGGGAQSGGW RGLALVAGAL SSSHR

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

MFPSSSPSPS PSSSKKQQQL SGGVGVGGAA AAASSNDRPP LCVQGDSGLV LTTDPKPRLR  60
WTVELHDRFV DAVTQLGGPD KATPKTIMRV MGVKGLTLYH LKSHLQKFRL GKQHKDFNDH  120
SVKDAMDMQR NAASSSGIMG RSMNDVHVNE ALRMKMEVQR RFHEQLEVQK HLQMRVEAQG  180
KYMQTILEKA YQAISSSGDC ATWHAGYKSL GSQAVLDIGS SMSFPSLQDD LQLYGGSHLD  240
HLHQQHEQME IRPSIDTFLA FNYSSSTGKS PMVWPGADDG GGEPAKISGD HQLQTAAPAT  300
TTMMMEAITM SGGDSMGSKG FEGQMSSKLD MRSPPPQQTA LPVGSERMSS PIVGAKARNI  360
SYGRVKSKEE ERSELAFLVR EIRNLMAGNR DIVILKIHPG PTCQSLTLSF TPHLSTSLQN  420
PHSSRFLTLR TAAGRSDEGG GGARDDVGRS GRQQRAPATT GAWDGGERSL GLRGRRSSGQ  480
QRTEFGAAGG GGGGAQSGGW RGLALVAGAL SSSHR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-17	56	112	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	56	112	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	56	112	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	56	112	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119588	0.0	AK119588.1 Oryza sativa Japonica Group cDNA clone:002-117-C12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881808.1	0.0	myb family transcription factor APL isoform X2
Swissprot	Q9SAK5	2e-82	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A0E0GWU1	0.0	A0A0E0GWU1_ORYNI; Uncharacterized protein
STRING	ONIVA03G43890.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2504	38	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	4e-82	G2-like family protein

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]