PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G42340.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 316aa    MW: 34110.7 Da    PI: 4.6144
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G42340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.51.6e-2081541128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyat..gkrknratk......s 80 
                      l pG+ F+P+d+ lv+ +L++k+++ ++e  + i+++d+y+++P +L         ++++++ wyfF++ + ++++  + r++ra+       +
  ONIVA03G42340.1   8 LEPGYAFRPSDDGLVTLFLRPKIAKIPFEH-RLINHADVYSTDPAELVGehrpapGTHGSSRVWYFFCSPRYTSKRkaSGRRQRAVGgggggcE 100
                      579************************999.89**************733567665556778******98766654114466666443443335 PP

              NAM  81 gyWkatgkdkevlskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                       +Wk+ g +k+v+ ++g+ vg  + + +       +g+a++ ++  W+m ey l
  ONIVA03G42340.1 101 NVWKSEGGKKAVIGADGRRVGYLQKFSYGvyesssSGSARSFTRLGWCMTEYGL 154
                      67********************999999666777779999999*********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-336173IPR003441NAC domain
PROSITE profilePS5100528.8878173IPR003441NAC domain
PfamPF023656.4E-1310153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDDDEIALEP GYAFRPSDDG LVTLFLRPKI AKIPFEHRLI NHADVYSTDP AELVGEHRPA  60
PGTHGSSRVW YFFCSPRYTS KRKASGRRQR AVGGGGGGCE NVWKSEGGKK AVIGADGRRV  120
GYLQKFSYGV YESSSSGSAR SFTRLGWCMT EYGLDDDAID GADKQVLCKV YRSPRAVCAE  180
ARTAAAKCSG SKRKADDGAD HPEAPPSARP RQEEAGSEHD EQPELPPELD LDALLSAPMD  240
ENLESTFSTA ATEQYMRYLM NDEPLPWAPT MDPVDGGAGG GDEFIQTANG PCMDGEVFAR  300
LAAGETLDDI LGSTSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-13517214164NO APICAL MERISTEM PROTEIN
1ut4_B3e-13517214164NO APICAL MERISTEM PROTEIN
1ut7_A3e-13517214164NO APICAL MERISTEM PROTEIN
1ut7_B3e-13517214164NO APICAL MERISTEM PROTEIN
3swm_A3e-13517217167NAC domain-containing protein 19
3swm_B3e-13517217167NAC domain-containing protein 19
3swm_C3e-13517217167NAC domain-containing protein 19
3swm_D3e-13517217167NAC domain-containing protein 19
3swp_A3e-13517217167NAC domain-containing protein 19
3swp_B3e-13517217167NAC domain-containing protein 19
3swp_C3e-13517217167NAC domain-containing protein 19
3swp_D3e-13517217167NAC domain-containing protein 19
4dul_A3e-13517214164NAC domain-containing protein 19
4dul_B3e-13517214164NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629679.10.0NAC transcription factor NAM-2
TrEMBLA0A0E0GW870.0A0A0E0GW87_ORYNI; Uncharacterized protein
STRINGONIVA03G42340.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-13NAC family protein