PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G41480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 319aa MW: 34185.8 Da PI: 4.3968 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 63.7 | 5.7e-20 | 9 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrd..kkyatgkrknratk.....sg 81 l+pG+ FhP+d+ l++ +L++++++ ++e + i+++d+y+++P +L ++++++ wyfF++ +k +t+ r++ra+ ++ ONIVA03G41480.1 9 LAPGYVFHPSDDGLITLFLRPSIAKIPFED-RLINHADVYSADPAELVGehrpapGTHGSSSVWYFFCSPPftSKRKTSGRRQRAVGgggggES 101 579************************998.88**************7335666655557779*****87511444456677776554444477 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128 +Wk+ g +k+v+ ++g+ vg + + + +g+a++ ++ W+m ey l ONIVA03G41480.1 102 VWKSEGGKKAVIGADGRRVGYLQKFSYGvyesssSGSARTFTRLGWCMTEYGL 154 8********************99999966677766889999999*******76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-33 | 7 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.247 | 9 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-12 | 11 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MADDDEIALA PGYVFHPSDD GLITLFLRPS IAKIPFEDRL INHADVYSAD PAELVGEHRP 60 APGTHGSSSV WYFFCSPPFT SKRKTSGRRQ RAVGGGGGGE SVWKSEGGKK AVIGADGRRV 120 GYLQKFSYGV YESSSSGSAR TFTRLGWCMT EYGLDDDAID GADKQVLCKV YRSPRAVCAE 180 ARTAAAAKSA DSPCSGSKRK ADDGADHPEA PPSARPRQEE AGSEHGEQPA ILPELDLDAL 240 LSAPMDDSLG VEFDTATTEQ YMRYLMNDEP LPWAPTMEVA GGGDEFIETT NGPCMGEEEI 300 IQRLAAGETL DDILGSNPN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629669.1 | 0.0 | NAC domain-containing protein 71-like | ||||
Refseq | XP_015629670.1 | 0.0 | NAC domain-containing protein 71-like | ||||
TrEMBL | A0A0E0GVW7 | 0.0 | A0A0E0GVW7_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G41430.1 | 0.0 | (Oryza nivara) | ||||
STRING | ONIVA03G41480.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4363 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-09 | NAC family protein |