PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G39240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 216aa MW: 22667.7 Da PI: 8.4511 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21 | 6.2e-07 | 144 | 170 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L++l+P + ONIVA03G39240.1 144 SHSLAERARREKISERMKILQDLVPGC 170 8************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.84E-8 | 138 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.18E-4 | 138 | 172 | No hit | No description |
PROSITE profile | PS50888 | 9.502 | 140 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-8 | 143 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-4 | 144 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MDPAPTLAAE LWRTPYLGGG GGGGGGGRGL EAAASGVTEQ SNGSRGGGGG GGAGRRRQRE 60 APALEDDSSR IVSTSGGGGG GQDLTDSEAK RFKASKSDNS SLRTEAETDS RNASKSGDQN 120 PPPPEPPKQD YIHVRARRGQ ATDSHSLAER ARREKISERM KILQDLVPGC NKFGAQVYNT 180 APGLTFDPQT PREYAQGSTP SEWLHMQIGG TYERVT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100177 | 0.0 | AK100177.1 Oryza sativa Japonica Group cDNA clone:J023029J10, full insert sequence. | |||
GenBank | HQ858847 | 0.0 | HQ858847.1 Oryza sativa Japonica Group isolate UT1610 bHLH transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629323.1 | 1e-110 | transcription factor BHLH089-like | ||||
Swissprot | Q84T08 | 1e-111 | BH089_ORYSJ; Transcription factor BHLH089 | ||||
TrEMBL | A0A0E0GV46 | 1e-153 | A0A0E0GV46_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0P2Q6 | 1e-153 | A0A0E0P2Q6_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G39460.1 | 1e-154 | (Oryza rufipogon) | ||||
STRING | ONIVA03G39240.1 | 1e-154 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3065 | 35 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 1e-32 | BIG PETAL P |
Publications ? help Back to Top | |||
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