PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G38180.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 809aa MW: 87420 Da PI: 6.4796

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G38180.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	38.8	2.7e-12	705	759	47	101
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 ++lp +er +a++s++ eA r++dPvyG++gvi++lq q++ ++ ela +++++ ONIVA03G38180.1 705 EQLPVQERGRAADSMAAEAYRRVQDPVYGCAGVINRLQDQIRAAQCELAWTHAQI 759 688999********************************************99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.630.10	1.2E-92	63	113	No hit	No description
SuperFamily	SSF53187	1.32E-62	69	107	No hit	No description
SuperFamily	SSF52025	3.27E-42	114	329	No hit	No description
Gene3D	G3DSA:3.50.30.30	1.0E-33	147	304	No hit	No description
SuperFamily	SSF53187	1.32E-62	311	570	No hit	No description
Gene3D	G3DSA:3.40.630.10	1.2E-92	312	574	No hit	No description
CDD	cd08022	4.99E-110	325	572	No hit	No description
Pfam	PF04389	2.9E-15	329	537	IPR007484	Peptidase M28
SuperFamily	SSF47672	2.62E-27	571	703	IPR007365	Transferrin receptor-like, dimerisation domain
Gene3D	G3DSA:1.20.930.40	1.6E-16	575	705	IPR007365	Transferrin receptor-like, dimerisation domain
Pfam	PF04253	2.2E-19	601	702	IPR007365	Transferrin receptor-like, dimerisation domain
Pfam	PF03195	1.2E-9	705	755	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006508	Biological Process	proteolysis
GO:0009640	Biological Process	photomorphogenesis
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0009910	Biological Process	negative regulation of flower development
GO:0010080	Biological Process	regulation of floral meristem growth
GO:0010081	Biological Process	regulation of inflorescence meristem growth
GO:0010082	Biological Process	regulation of root meristem growth
GO:0010305	Biological Process	leaf vascular tissue pattern formation
GO:0004181	Molecular Function	metallocarboxypeptidase activity

Sequence ? help Back to Top
Protein Sequence Length: 809 aa Download sequence Send to blast
MLSQPAAALA RLPPASVRVL VGFGAALLVS LVVLHRRPAA RGAAGGGGPA EYDPAARFLA 60 LSEGANATIA ADLRALTAGP HLAGTGAAAG AAARVLSGFR AAGLRTLTRE YTPLLSYPGH 120 ASLALLRADR TLLAHLSLDE PADVGRRLVR PYHAYAPSGG AVAEAVFVNL GREEDYLTLE 180 RLGVSVRGRV AVAIRGGGYR GGVVRRAAER SAAAVLIAGH ADGGVERGTV ILGGPGDPLT 240 PGWAATAGAE RLDFDHEDVK RRFPAIPSMP VSGKTASAII RTLGGPALPA DWQTGVGLPV 300 DVGGVGPGPT LVNFTYQEDR KMGMIQDIFA IIKGYEEPDR YVILGNHRDA WTYGAVDPNS 360 GTSALLDIAR RLGIMLQSGW TPRRTIILCS WDAEEFGMFS KISFICVPFI SFLHFEGSFF 420 QIGSTEWVEE NLEDLQSKAV AYLNVDCAVQ GIGLFAGSTP QLDNLLVDVT RQVKDPDVEG 480 KTVHDTWNKM TGGINIERLA RTDSDFAPFL HHAGIPCMDL YYGKEFPGYH TALDSYHWME 540 KHGDPLFLRH VAIVEIWGLL ALRLADDPVL PFDYQTYASQ LQEHANAFSS MMENSKWVHL 600 LNRSIEDLSD AGLEFLKEAK KLQDQNISDG YSLMRRRLLN DRLLLAERSF LQADGLQGRG 660 WFKHLMYSPP EDYESKLSFF PGVADAISRS SNRSAKEQQA AVRHEQLPVQ ERGRAADSMA 720 AEAYRRVQDP VYGCAGVINR LQDQIRAAQC ELAWTHAQIA MHSAAAAHAR TTLPPGQRDG 780 GGGGAPSTQQ ATTSAAWQLE DFASEFSFP

Sequence ? help Back to Top

Protein Sequence Length: 809 aa Download sequence Send to blast

MLSQPAAALA RLPPASVRVL VGFGAALLVS LVVLHRRPAA RGAAGGGGPA EYDPAARFLA  60
LSEGANATIA ADLRALTAGP HLAGTGAAAG AAARVLSGFR AAGLRTLTRE YTPLLSYPGH  120
ASLALLRADR TLLAHLSLDE PADVGRRLVR PYHAYAPSGG AVAEAVFVNL GREEDYLTLE  180
RLGVSVRGRV AVAIRGGGYR GGVVRRAAER SAAAVLIAGH ADGGVERGTV ILGGPGDPLT  240
PGWAATAGAE RLDFDHEDVK RRFPAIPSMP VSGKTASAII RTLGGPALPA DWQTGVGLPV  300
DVGGVGPGPT LVNFTYQEDR KMGMIQDIFA IIKGYEEPDR YVILGNHRDA WTYGAVDPNS  360
GTSALLDIAR RLGIMLQSGW TPRRTIILCS WDAEEFGMFS KISFICVPFI SFLHFEGSFF  420
QIGSTEWVEE NLEDLQSKAV AYLNVDCAVQ GIGLFAGSTP QLDNLLVDVT RQVKDPDVEG  480
KTVHDTWNKM TGGINIERLA RTDSDFAPFL HHAGIPCMDL YYGKEFPGYH TALDSYHWME  540
KHGDPLFLRH VAIVEIWGLL ALRLADDPVL PFDYQTYASQ LQEHANAFSS MMENSKWVHL  600
LNRSIEDLSD AGLEFLKEAK KLQDQNISDG YSLMRRRLLN DRLLLAERSF LQADGLQGRG  660
WFKHLMYSPP EDYESKLSFF PGVADAISRS SNRSAKEQQA AVRHEQLPVQ ERGRAADSMA  720
AEAYRRVQDP VYGCAGVINR LQDQIRAAQC ELAWTHAQIA MHSAAAAHAR TTLPPGQRDG  780
GGGGAPSTQQ ATTSAAWQLE DFASEFSFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jbk_A	6e-97	61	687	19	669	GLUTAMATE CARBOXYPEPTIDASE 2
4ome_A	6e-97	61	687	19	669	Glutamate carboxypeptidase 2
4p44_A	6e-97	61	687	19	669	Glutamate carboxypeptidase 2
4p45_A	6e-97	61	687	19	669	Glutamate carboxypeptidase 2
4p4b_A	6e-97	61	687	19	669	Glutamate carboxypeptidase 2
4p4d_A	6e-97	61	687	19	669	Glutamate carboxypeptidase 2
4p4e_A	6e-97	61	687	19	669	Glutamate carboxypeptidase 2
4p4f_A	6e-97	61	687	19	669	Glutamate carboxypeptidase 2
4p4i_A	6e-97	61	687	19	669	Glutamate carboxypeptidase 2
4p4j_A	6e-97	61	687	19	669	Glutamate carboxypeptidase 2
4w9y_A	6e-97	61	687	19	669	Glutamate carboxypeptidase 2
5o5r_A	6e-97	61	687	19	669	Glutamate carboxypeptidase 2
5o5t_A	6e-97	61	687	19	669	Glutamate carboxypeptidase 2
5o5u_A	6e-97	61	687	19	669	Glutamate carboxypeptidase 2
6ety_A	6e-97	61	687	19	669	Glutamate carboxypeptidase 2
6f5l_A	6e-97	61	687	19	669	Glutamate carboxypeptidase 2
6h7y_A	6e-97	61	687	19	669	Glutamate carboxypeptidase 2
6h7z_A	6e-97	61	687	19	669	Glutamate carboxypeptidase 2
6hkj_A	6e-97	61	687	19	669	Glutamate carboxypeptidase 2
6hkz_A	6e-97	61	687	19	669	Glutamate carboxypeptidase 2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regular timing (plastochron) of lateral organs formation. May regulate the rate of leaf initiation and the duration of vegetative phase. Seems to be redundant to the function of PLASTOCHRON1 and PLASTOCHRON2, but to act in an independent pathway. May be required for the synthesis of small signaling molecules that have a role in regulating meristem function. Involved in plant hormone homeostasis. {ECO:0000269\|PubMed:19228340}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB447403	0.0	AB447403.1 Oryza sativa Japonica Group PLA3 mRNA for plastochron3, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025879781.1	0.0	probable glutamate carboxypeptidase PLA3 isoform X1
Swissprot	Q852M4	0.0	PLAT3_ORYSJ; Probable glutamate carboxypeptidase PLA3
TrEMBL	A0A0E0P2C3	0.0	A0A0E0P2C3_ORYRU; Uncharacterized protein
STRING	ORUFI03G38450.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8038	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	6e-11	LOB domain-containing protein 24

Publications ? help Back to Top
Kawakatsu T, et al. PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice. Plant J., 2009. 58(6): p. 1028-40 [PMID:19228340]