PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G37780.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 414aa    MW: 42449.6 Da    PI: 7.3706
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G37780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.71.4e-36491641105
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec..eaessss 80 
                      a+g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LGfd++sk+ieWL+++a pai+ l+++                  ++  +  +s++
  ONIVA03G37780.1  49 ATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTLPSLdpaafaaiphaaA----ADAapTRRRSQQ 138
                      5899*************************************************************8888876643321....222232333333 PP

              TCP  81 sasnsssgkaaksaa.kskksqksaa 105
                      ++++ s+++ ++s+  +sk s+k+ +
  ONIVA03G37780.1 139 QQQQLSNKSGCSSTSeTSKGSDKEVT 164
                      33333333333333323333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.1E-3551160IPR005333Transcription factor, TCP
PROSITE profilePS5136932.60752110IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MEAAVGDGEG GGGGGGRGKR GRGGGGGEMV EAVWGQTGST ASRIYRVRAT GGKDRHSKVY  60
TAKGIRDRRV RLSVATAIQF YDLQDRLGFD QPSKAIEWLI NAASPAIDTL PSLDPAAFAA  120
IPHAAAADAA PTRRRSQQQQ QQLSNKSGCS STSETSKGSD KEVTVASAPA QAASFTELLI  180
AGVAASSAGG GAIGNGADCV GIAHPGKGGA EGASTYGFSA ASSFGDAPPI GMVPAPPFNF  240
SAPGADMAAH YPLAQDQLAA PPPPAGGDYN LNFSMSSGFL GANRGTLQSN SPSNMSGHHH  300
HHHQQQLQRL DGSTISFLLG HAAAAAHPAA SEGQITSTAA LQLNASSKGT EDIIIRLIVV  360
TFPARAHRGE LLQVYCDDCP CSFSWVIVLL CCFLAIMNTL PLLLPAIAIT QTIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2557111155Putative transcription factor PCF6
5zkt_B2e-2557111155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629084.10.0transcription factor PCF6
SwissprotA2XMN10.0PCF6_ORYSI; Transcription factor PCF6
TrEMBLA0A0E0GUK90.0A0A0E0GUK9_ORYNI; Uncharacterized protein
STRINGONIVA03G37780.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-33TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2