PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G36430.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 315aa    MW: 33040.2 Da    PI: 7.8588
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G36430.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.14.9e-06152198354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++ n+r r RR+r+ +++  L++l+ +      +K + a++L +A  YI+ L
  ONIVA03G36430.2 152 TTTNKRPRVRRERLGERIIALQQLVSPF-----GKSDTASVLHEALGYIRFL 198
                      678************************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.754149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-12151210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-7154207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-5155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.79E-5155203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MVKEEEIITE AAGARGYMEM LGLGEEAADY LMCLSPSSYL SSPAASTTTA VASPTCASYL  60
APHPYHHLLS FSGQDQYHGD DVFGLQYYGG DQVIPAVVPQ KSSPTTECSS SVSSMSSSPT  120
ATAISSSKSP AFKKKGSRGC DQRKATAPAA ATTTNKRPRV RRERLGERII ALQQLVSPFG  180
KSDTASVLHE ALGYIRFLHD QVQVLSSPYL QRLPPSARVP EQERGTPAAE EQPPALRPSD  240
LRSRGLCLVP ISCTEHVAGA GTGHGNGADL WSVAAGMAKA TATVTAAVER SKEAAAAAAA  300
TAALLRADRP GQQLA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728330.0AK072833.1 Oryza sativa Japonica Group cDNA clone:J023136C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628341.11e-180transcription factor bHLH113
RefseqXP_015628342.11e-180transcription factor bHLH113
TrEMBLA0A0E0GU320.0A0A0E0GU32_ORYNI; Uncharacterized protein
STRINGONIVA03G36430.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-28bHLH family protein