PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G36430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 315aa MW: 33040.2 Da PI: 7.8588 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.1 | 4.9e-06 | 152 | 198 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ n+r r RR+r+ +++ L++l+ + +K + a++L +A YI+ L ONIVA03G36430.1 152 TTTNKRPRVRRERLGERIIALQQLVSPF-----GKSDTASVLHEALGYIRFL 198 678************************8.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.754 | 149 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-12 | 151 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-7 | 154 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-5 | 155 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.79E-5 | 155 | 203 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MVKEEEIITE AAGARGYMEM LGLGEEAADY LMCLSPSSYL SSPAASTTTA VASPTCASYL 60 APHPYHHLLS FSGQDQYHGD DVFGLQYYGG DQVIPAVVPQ KSSPTTECSS SVSSMSSSPT 120 ATAISSSKSP AFKKKGSRGC DQRKATAPAA ATTTNKRPRV RRERLGERII ALQQLVSPFG 180 KSDTASVLHE ALGYIRFLHD QVQVLSSPYL QRLPPSARVP EQERGTPAAE EQPPALRPSD 240 LRSRGLCLVP ISCTEHVAGA GTGHGNGADL WSVAAGMAKA TATVTAAVER SKEAAAAAAA 300 TAALLRADRP GQQLA |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK072833 | 0.0 | AK072833.1 Oryza sativa Japonica Group cDNA clone:J023136C11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628341.1 | 1e-180 | transcription factor bHLH113 | ||||
Refseq | XP_015628342.1 | 1e-180 | transcription factor bHLH113 | ||||
TrEMBL | A0A0E0GU32 | 0.0 | A0A0E0GU32_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G36430.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8082 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 1e-28 | bHLH family protein |