PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G36380.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 440aa    MW: 46357.4 Da    PI: 6.564
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G36380.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.19e-29195251259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+ k++e prsYY+Ct  gCpvkk vers+ d+ + eitY+g+H h+
  ONIVA03G36380.3 195 KDGYNWRKYGQKQLKDAESPRSYYKCTRDGCPVKKIVERSS-DGCIKEITYKGRHSHP 251
                      8****************************************.***************8 PP
2WRKY103.31.3e-32340398159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg++ prsYY+Ct  gC+v+k++er++ dpk+v +tY+g+Hnh+
  ONIVA03G36380.3 340 LDDGYRWRKYGQKVVKGNPRPRSYYKCTADGCNVRKQIERASADPKCVLTTYTGRHNHD 398
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.768189253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-26190253IPR003657WRKY domain
SuperFamilySSF1182903.4E-23193253IPR003657WRKY domain
SMARTSM007749.8E-31194252IPR003657WRKY domain
PfamPF031064.6E-22195251IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-34325400IPR003657WRKY domain
SuperFamilySSF1182904.84E-28332400IPR003657WRKY domain
PROSITE profilePS5081136.059335400IPR003657WRKY domain
SMARTSM007744.4E-36340399IPR003657WRKY domain
PfamPF031062.5E-24341398IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MADRRRSDGG GGGMQQQPFT SPGQERVFDG GGVPGQVAAP YGSDFDQSSY MALLAAGAVG  60
VGVGVQPTAA PWAVEEDVAA APPGISLAPQ FSMANYAPPP SYQHPATLVS PPLAAGLHPY  120
PPYLHGVDAP PPQWPPRPAP PPSFSVLDLA AAAAPHEQRH SMQQLLLRAA AFGGGMHAAA  180
APAPAAAAAI EQPAKDGYNW RKYGQKQLKD AESPRSYYKC TRDGCPVKKI VERSSDGCIK  240
EITYKGRHSH PRPVEPRRGG AASSSSSAMA AGTDHNAGAA ADDAAAADED DPSDDDDTLL  300
HEDDDDGEEG HDRGVDGEVG QRVVRKPKII LQTRSEVDLL DDGYRWRKYG QKVVKGNPRP  360
RSYYKCTADG CNVRKQIERA SADPKCVLTT YTGRHNHDPP GRPPAAANLQ MPGPAAMSLA  420
GGGTAHQQPS GGAHQMKEET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-33196400877Probable WRKY transcription factor 4
2lex_A1e-33196400877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418480.0AY341848.1 Oryza sativa (japonica cultivar-group) WRKY7 mRNA, complete cds.
GenBankAY3418520.0AY341852.1 Oryza sativa (japonica cultivar-group) WRKY11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630965.10.0probable WRKY transcription factor 58
TrEMBLA0A0E0GU250.0A0A0E0GU25_ORYNI; Uncharacterized protein
STRINGONIVA03G36380.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.17e-37WRKY DNA-binding protein 4