PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G36380.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 815aa    MW: 88033.3 Da    PI: 7.1501
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G36380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.92.1e-28570626259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+ k++e prsYY+Ct  gCpvkk vers+ d+ + eitY+g+H h+
  ONIVA03G36380.1 570 KDGYNWRKYGQKQLKDAESPRSYYKCTRDGCPVKKIVERSS-DGCIKEITYKGRHSHP 626
                      8****************************************.***************7 PP
2WRKY102.23e-32715773159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg++ prsYY+Ct  gC+v+k++er++ dpk+v +tY+g+Hnh+
  ONIVA03G36380.1 715 LDDGYRWRKYGQKVVKGNPRPRSYYKCTADGCNVRKQIERASADPKCVLTTYTGRHNHD 773
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.128.201.4E-13198IPR012674Calycin
SuperFamilySSF508144.87E-53698IPR011038Calycin-like
PfamPF122046.4E-1369250IPR022017Domain of unknown function DUF3598
SuperFamilySSF508142.39E-30113255IPR011038Calycin-like
Gene3DG3DSA:2.40.128.205.4E-43114255IPR012674Calycin
PROSITE profilePS5081122.768564628IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.4E-26565628IPR003657WRKY domain
SuperFamilySSF1182908.11E-23568628IPR003657WRKY domain
SMARTSM007749.8E-31569627IPR003657WRKY domain
PfamPF031061.0E-21570626IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.8E-34700775IPR003657WRKY domain
SuperFamilySSF1182901.16E-27707775IPR003657WRKY domain
PROSITE profilePS5081136.059710775IPR003657WRKY domain
SMARTSM007744.4E-36715774IPR003657WRKY domain
PfamPF031065.6E-24716773IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MFTVDKYQQV GFFQEEKAFA LRYQTAGMLE TVLRAGVLGE DDTGEESPKN LKIPSRKPSI  60
VCENCLYSRE GNGRVRAFHI MDPKGVLDML IIFHEKQGSE VPLMYSSDDA DITNSDRIAP  120
LLGRWEGRSV TKRSGVYGAT LSEADTVVLL EKDRNGQLIL DNMSTKSGSS TTTTVHWTGS  180
ANNNLLQFDG GYEMTLLPGG MYMGYPTDIG KIVNDMDSFH LEFCWMESPG KRQRLVRTYD  240
SAGLAVSSTY FFETKRLSSL KPHHHLRRRV GDHGRTPDLS NANRVAGEGE GGDRFRRRRV  300
AAVTAAAIDR AKSPEEGDSF RWFWKYSAQA VGASQSNPNT SRSDPLSWSA AVVVIDREAL  360
PLHKQRKLTR AAAVAMADRR RSDGGGGGMQ QQPFTSPGQE RVFDGGGVPG QVAAPYGSDF  420
DQSSYMALLA AGAVGVGVGV QPTAAPWAVE EDVAAAPPGI SLAPQFSMAN YAPPPSYQHP  480
ATLVSPPLAA GLHPYPPYLH GVDAPPPQWP PRPAPPPSFS VLDLAAAAAP HEQRHSMQQL  540
LLRAAAFGGG MHAAAAPAPA AAAAIEQPAK DGYNWRKYGQ KQLKDAESPR SYYKCTRDGC  600
PVKKIVERSS DGCIKEITYK GRHSHPRPVE PRRGGAASSS SSAMAAGTDH NAGAAADDAA  660
AADEDDPSDD DDTLLHEDDD DGEEGHDRGV DGEVGQRVVR KPKIILQTRS EVDLLDDGYR  720
WRKYGQKVVK GNPRPRSYYK CTADGCNVRK QIERASADPK CVLTTYTGRH NHDPPGRPPA  780
AANLQMPGPA AMSLAGGGTA HQQPSGGAHQ MKEET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yvf_A1e-1171255103356BFA1
5yvf_B1e-1171255103356BFA1
5yvf_C1e-1171255103356BFA1
5yvf_D1e-1171255103356BFA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418520.0AY341852.1 Oryza sativa (japonica cultivar-group) WRKY11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630965.10.0probable WRKY transcription factor 58
TrEMBLA0A0E0GU250.0A0A0E0GU25_ORYNI; Uncharacterized protein
STRINGONIVA03G36380.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.12e-35WRKY DNA-binding protein 4