PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G35980.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

M-type_MADS

Protein Properties

Length: 197aa MW: 22529.8 Da PI: 9.7074

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G35980.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.1	7.5e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gklyey++ ONIVA03G35980.1 9 KRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYAT 59 79***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.3E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.941	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.31E-43	2	76	No hit	No description
SuperFamily	SSF55455	2.62E-34	2	86	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-31	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-31	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-31	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MGRGKVQLKR IENKINRQVT FSKRRSGLLK KANEISVLCD AEVALIIFST KGKLYEYATD 60 SCMDKILERY ERYSYAEKVL ISAESDTQGN WCHEYRKLKA KSQLMLESIN ELQRKNPCSF 120 LQLVEKQKVQ KQQVQWDQTQ PQTSSSSSSF MMREALPTTN ISNYPAAAGE RIEDVAAGQP 180 QHVRIGLPPW MLSHING

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	3e-23	1	74	1	73	MEF2 CHIMERA
6byy_B	3e-23	1	74	1	73	MEF2 CHIMERA
6byy_C	3e-23	1	74	1	73	MEF2 CHIMERA
6byy_D	3e-23	1	74	1	73	MEF2 CHIMERA
6bz1_A	3e-23	1	74	1	73	MEF2 CHIMERA
6bz1_B	3e-23	1	74	1	73	MEF2 CHIMERA
6bz1_C	3e-23	1	74	1	73	MEF2 CHIMERA
6bz1_D	3e-23	1	74	1	73	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269\|Ref.9}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB041020	1e-169	AB041020.1 Oryza sativa RAP1B mRNA for AP1-like MADS box protein, complete cds.
GenBank	AK069331	1e-169	AK069331.1 Oryza sativa Japonica Group cDNA clone:J023019N01, full insert sequence.
GenBank	AY332478	1e-169	AY332478.1 Oryza sativa (japonica cultivar-group) MADS box protein (AGL10) mRNA, complete cds.
GenBank	AY551916	1e-169	AY551916.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS211 mRNA, complete cds.
GenBank	FJ750935	1e-169	FJ750935.1 Oryza sativa clone KCS096F11 MADS-box transcription factor 14 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631033.1	1e-120	MADS-box transcription factor 14 isoform X1
Swissprot	Q10CQ1	1e-116	MAD14_ORYSJ; MADS-box transcription factor 14
TrEMBL	A0A0E0GTX0	1e-146	A0A0E0GTX0_ORYNI; Uncharacterized protein
STRING	ONIVA03G35980.1	1e-146	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1151	37	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69120.1	4e-56	MIKC_MADS family protein

Publications ? help Back to Top
Jia H, et al. Characterization and transcriptional profiles of two rice MADS-box genes. Plant Sci., 2000. 155(2): p. 115-122 [PMID:10814814] Jang S,An K,Lee S,An G Characterization of tobacco MADS-box genes involved in floral initiation. Plant Cell Physiol., 2002. 43(2): p. 230-8 [PMID:11867703] Kim SL,Lee S,Kim HJ,Nam HG,An G OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol., 2007. 145(4): p. 1484-94 [PMID:17951465] Li D, et al. Functional characterization of rice OsDof12. Planta, 2009. 229(6): p. 1159-69 [PMID:19198875] Tanaka N, et al. The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice. Plant Cell, 2011. 23(6): p. 2143-54 [PMID:21705640] Kobayashi K, et al. Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene. Plant Cell, 2012. 24(5): p. 1848-59 [PMID:22570445] Wei X, et al. Fine mapping of BH1, a gene controlling lemma and palea development in rice. Plant Cell Rep., 2013. 32(9): p. 1455-63 [PMID:23689259] Su L,Shan JX,Gao JP,Lin HX OsHAL3, a Blue Light-Responsive Protein, Interacts with the Floral Regulator Hd1 to Activate Flowering in Rice. Mol Plant, 2016. 9(2): p. 233-244 [PMID:26537047] Wu F, et al. The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses. Plant J., 2017. 89(2): p. 310-324 [PMID:27689766]