PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G35150.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 366aa MW: 39974.6 Da PI: 4.6161 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 88.8 | 7e-28 | 50 | 136 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl k+ye++ed+ ++++isw gnsfvv+d + fa +Lp+yFkhsnf+SFvRQLn+Y v+ ++ weF+++ F +gkkell+ ONIVA03G35150.3 50 FLCKTYEVVEDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTY----VDPDR---------WEFANEGFLRGKKELLK 130 9**********************************************************....55555.........***************** PP XXXXXX CS HSF_DNA-bind 96 kikrkk 101 +ikr++ ONIVA03G35150.3 131 TIKRRR 136 ****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 3.54E-30 | 46 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 8.4E-31 | 46 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.3E-49 | 46 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.1E-13 | 50 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.9E-24 | 50 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.1E-13 | 88 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.1E-13 | 101 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0034620 | Biological Process | cellular response to unfolded protein | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071456 | Biological Process | cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MNPLRVIVKE EELDFAAAAA GEGSPSSWAV GVMDLPRPME GLGEAGPPPF LCKTYEVVED 60 PGTDTVISWG FAGNSFVVWD ANAFAAVLLP RYFKHSNFSS FVRQLNTYVD PDRWEFANEG 120 FLRGKKELLK TIKRRRPPPS SPPSSSSSSS SSQHQQQPAA ACLEVGQFGR DGVVNRLQRD 180 KSVLIAEVVK LRQEQQTTRA QMQAMEERIS AAEQKQQQMT VFLARAMKNP GFLQMLVDRQ 240 AGQHGARNRV LEDALSKKRR RPIEYLLTRN GETCAAGESA AMLAADGVAE PDGDTTPRGD 300 GGGGGDTESF WMQLLSLGLE EKQREDGVAG GVQESNSGGA DVDNDEEDDD DDVDVLVQSI 360 YHLSPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-24 | 31 | 135 | 10 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-24 | 31 | 135 | 10 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-24 | 31 | 135 | 10 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 134 | LKTIKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY332465 | 0.0 | AY332465.1 Oryza sativa (japonica cultivar-group) putative heat shock protein (HSP2) mRNA, complete cds. | |||
GenBank | AY344486 | 0.0 | AY344486.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF4 mRNA, complete cds. | |||
GenBank | AY998118 | 0.0 | AY998118.1 Oryza sativa heat shock protein 41 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628945.1 | 0.0 | heat stress transcription factor A-2a | ||||
Swissprot | Q84MN7 | 0.0 | HFA2A_ORYSJ; Heat stress transcription factor A-2a | ||||
TrEMBL | A0A0E0GTJ7 | 0.0 | A0A0E0GTJ7_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G35150.1 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 2e-86 | heat shock transcription factor A2 |
Publications ? help Back to Top | |||
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