PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G34090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 356aa MW: 37934.7 Da PI: 5.7583 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.9 | 1.6e-12 | 177 | 224 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ ++f L +++P + kK++Ka++L A++Y+k+Lq ONIVA03G34090.1 177 QEHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 224 67999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.025 | 174 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-10 | 177 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.37E-18 | 177 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-17 | 177 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.91E-13 | 179 | 228 | No hit | No description |
SMART | SM00353 | 6.1E-15 | 180 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MATQWFSNMV MDEPSFFHQW QSDGLLEQYT EQQIAVAFGQ AGEADAAAAA AATMVQQQQY 60 AAAEHRPRKA AKVNTSWDSC ITEQGSPADS SSPTILSFGG HADAAAAAAF ASAGQAQSAP 120 YYGGASAAAL KPKQELDAAA APFSQARPVK RSYDAMVAAD VAKAPAAAAS RPASQNQEHI 180 LAERKRREKL SQRFIALSKI VPGLKKMDKA SVLGDAIKYV KQLQDQVKGL EEEARRRPVE 240 AAVLVKKSQL SADDDDGSSC DENFDGGEAT AGLPEIEARV SERTVLVKIH CENRKGALIT 300 ALSEVETIGL TIMNTNVLPF TSSSLDITIM ATAGENFSLS VKDIVKKLNQ AFKLSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-13 | 179 | 233 | 9 | 63 | Transcription factor MYC2 |
5gnj_B | 2e-13 | 179 | 233 | 9 | 63 | Transcription factor MYC2 |
5gnj_E | 2e-13 | 179 | 233 | 9 | 63 | Transcription factor MYC2 |
5gnj_F | 2e-13 | 179 | 233 | 9 | 63 | Transcription factor MYC2 |
5gnj_G | 2e-13 | 179 | 233 | 9 | 63 | Transcription factor MYC2 |
5gnj_I | 2e-13 | 179 | 233 | 9 | 63 | Transcription factor MYC2 |
5gnj_M | 2e-13 | 179 | 233 | 9 | 63 | Transcription factor MYC2 |
5gnj_N | 2e-13 | 179 | 233 | 9 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 182 | 187 | ERKRRE |
2 | 183 | 188 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120539 | 0.0 | AK120539.1 Oryza sativa Japonica Group cDNA clone:J013129F07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627848.1 | 0.0 | transcription factor bHLH18 | ||||
Refseq | XP_015627849.1 | 0.0 | transcription factor bHLH18 | ||||
TrEMBL | A0A0E0GT46 | 0.0 | A0A0E0GT46_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G34090.2 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4213 | 35 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22750.2 | 1e-46 | bHLH family protein |