PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G32910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CO-like | ||||||||
Protein Properties | Length: 421aa MW: 45833.6 Da PI: 6.655 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.7 | 4.3e-07 | 17 | 60 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 +r C+ + + +++++C ++ +lC+ C + H+ H+v ONIVA03G32910.1 17 ARACDGCMRRRARWHCPADDAFLCQACDASVHSAnplarrhHRV 60 578*****************************668888886655 PP | |||||||
2 | CCT | 66.2 | 9.3e-23 | 338 | 381 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+a ONIVA03G32910.1 338 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRA 381 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.4E-7 | 15 | 62 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.798 | 15 | 62 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.7E-5 | 17 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.65E-11 | 18 | 62 | No hit | No description |
PROSITE profile | PS51017 | 15.993 | 338 | 380 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.2E-17 | 338 | 380 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MASAAAATGA ALGARTARAC DGCMRRRARW HCPADDAFLC QACDASVHSA NPLARRHHRV 60 RLPSASSSPA SSPRSAAAPR AGSDDPDAPA WLHGLKRRPR TPRTKPGGGG KHDASAATVA 120 AAAASAVPDL EAEESGIVGD TDHDVGEEDD EDLLYRVPVF DPMLAELYNP VAADDEEQQI 180 EQKPAARVMP FSEPSPEFAS GSVEADGLSG FDVPDMELAS FAADMESLLM GVDEGFDDLG 240 FLDDEKPHVK LDLDMDMDFA SISPAPAPER EERKRKRPEM ILKLDYEGVI DSWARDGASP 300 WFHGERPRFD PSESWPDFPA GSRGGLGAAV TAVTGGEREA RVSRYREKRR TRLFAKKIRY 360 EVRKLNAEKR PRMKGRFVKR AAALPPLPLP RHQHPPPPPP RALPPVPMML APRGAHGRYR 420 F |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 100 | LKRRPRT |
2 | 348 | 364 | RRTRLFAKKIRYEVRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120563 | 0.0 | AK120563.1 Oryza sativa Japonica Group cDNA clone:J013132M18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628112.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | A0A0E0GSN2 | 0.0 | A0A0E0GSN2_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G32910.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10004 | 22 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 1e-23 | B-box type zinc finger protein with CCT domain |