PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G31950.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 340aa    MW: 36904.2 Da    PI: 9.7949
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G31950.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.16.2e-33253309158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq+Rak+e ekk+  ksrkpylheSRh+hA+rR+Rg+gGrF
  ONIVA03G31950.2 253 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKSRKPYLHESRHQHAMRRARGTGGRF 309
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.5E-37251312IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.398252312IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.0E-28254309IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.5E-25255277IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860257277IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.5E-25286309IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDPPVHAAEL NHRNNYGPLS SPNPISLRIR ARLSLARARE PVAAAAASSS SSEEPEPQRR  60
RAPPPIGRPL GERERERSIE SYWPPPPRPG CSLSRPGGTN LVEPRGQGAL PSGIPIQQPW  120
WTTSAGVGAV SPAVVAPGSG AGISLSGRDG GGDDAAEESS DDSRRSGETK DGSTGQEKHH  180
ATSQMTALAS DYLTPFSQLE LNQPIASAAY QYPDSYYMGM VGPYGPQAMS AQTHFQLPGL  240
THSRMPLPLE ISEEPVYVNA KQYHGILRRR QSRAKAELEK KVVKSRKPYL HESRHQHAMR  300
RARGTGGRFL NTKKNEDGAP SEKAEPNKGE QNSGVIIWMY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-21253316265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8470120.0EU847012.1 Oryza sativa Japonica Group clone KCS256D08 CCAAT-binding transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632634.11e-174nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_015632635.11e-174nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_015632636.11e-174nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_015632637.11e-174nuclear transcription factor Y subunit A-4 isoform X1
TrEMBLA0A0E0GSA40.0A0A0E0GSA4_ORYNI; Uncharacterized protein
STRINGONIVA03G31950.40.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.14e-39nuclear factor Y, subunit A9