PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G31510.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 834aa    MW: 93445.8 Da    PI: 9.1916
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G31510.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS389.34.4e-1194598301374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++cA+av+++d + a++lL++++++a p+gd  qRla +f+ +L+arla+++s+ly++l +++t+    s+ l+a++l+  ++P+ ++s
  ONIVA03G31510.3 459 LRTLLIHCAQAVAADDRRTANELLKQIRQHAKPNGDGSQRLAYCFADGLEARLAGTGSQLYHKLVAKRTT---ASDMLKAYHLYLAACPFKRLS 549
                      6789************************************************************999999...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      h++ Nq+Il  ++++++vHiiDf+i  G+QWp+L++ L +R++gpp+lRiTg++ p++g   +e++eetg+rLa++Ae++gvpfe++  +a+++
  ONIVA03G31510.3 550 HFLSNQTILSLTKNASKVHIIDFGIYFGFQWPCLIRRLFKREGGPPKLRITGIDVPQPGfrPTERIEETGQRLAEYAEKIGVPFEYQG-IASKW 642
                      **********************************************************9*****************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      e++++e+L++k++E+++Vn+ ++  +l de+v+++s+r++vL+++++++P ++++   + +++ + F +rf eal ++salfd+le+++pr++ 
  ONIVA03G31510.3 643 ETIRVEDLNIKKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSIPFFITRFREALFHFSALFDMLETTVPRDDA 736
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +r+ +Er l+gre+ nv+aceg++r+er et+++W+ r  +aGF + pl+++++ +ak  ++ ++ + + ++e+sg+l++gWk+r ++++S W+
  ONIVA03G31510.3 737 QRALIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQDIVLKAKDKVKDIYHKDFVIDEDSGWLLQGWKGRIIYAISTWK 830
                      *****************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.96433810IPR005202Transcription factor GRAS
PfamPF035141.5E-116459830IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MPSSPYSLSL SSFSLLPSLF PVFLLHRSVP LLLLLLSSIR THRHLRSAAA AAAAAARPRS  60
HAHLARRRRE GPGNRWAAEG EKVLEGATPR ASPSRLGPNR RLSMGLDNNF GELSGMFCGL  120
SYDGYTDHGS QSDYFRFADP QPAIVPQMDA RPSSAASSTA SRAAVSSGTD NPEDWEFISD  180
ESLNYISRML MEEDIDEKVS MYQEESAALR AAAKPFYDIL GHKFPPSPDR QLVAWPLDSP  240
SESSTSSYPH SLASSVTSSN ISGAVDSSQR RYVGHSEYRS LSGHSSQPPV GPSSDVRNAM  300
ETLEDPLISN GRIPEYLFES FPTWDFRRGV DEAQKFLPGS DKVVIDLEAG GVAKRQEAGK  360
AISLNGSKAE VLKVKKNRQS EDLDVMEGRN SKQSAFCSDE PDWIEMFDVL LRQTEKKATD  420
LRKMMRFEAS KNSQVAQPKG PSGTRSRGRK PTKKDVVDLR TLLIHCAQAV AADDRRTANE  480
LLKQIRQHAK PNGDGSQRLA YCFADGLEAR LAGTGSQLYH KLVAKRTTAS DMLKAYHLYL  540
AACPFKRLSH FLSNQTILSL TKNASKVHII DFGIYFGFQW PCLIRRLFKR EGGPPKLRIT  600
GIDVPQPGFR PTERIEETGQ RLAEYAEKIG VPFEYQGIAS KWETIRVEDL NIKKDEVVIV  660
NCLYRFRNLI DETVAVDSPR NRVLNTIRQV NPAIFIHGIV NGSYSIPFFI TRFREALFHF  720
SALFDMLETT VPRDDAQRAL IERDLFGREA LNVIACEGSD RVERPETYKQ WQVRNLRAGF  780
VQSPLNQDIV LKAKDKVKDI YHKDFVIDED SGWLLQGWKG RIIYAISTWK PNNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-514638308375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15668RPRSHAHLARRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0972770.0AC097277.6 Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete sequence.
GenBankAK1014020.0AK101402.1 Oryza sativa Japonica Group cDNA clone:J033037F15, full insert sequence.
GenBankAK1018480.0AK101848.1 Oryza sativa Japonica Group cDNA clone:J033069K04, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630936.10.0scarecrow-like protein 9
RefseqXP_015630937.10.0scarecrow-like protein 9
RefseqXP_015630938.10.0scarecrow-like protein 9
RefseqXP_015630939.10.0scarecrow-like protein 9
RefseqXP_015630940.10.0scarecrow-like protein 9
RefseqXP_015630941.10.0scarecrow-like protein 9
RefseqXP_015630942.10.0scarecrow-like protein 9
RefseqXP_015630943.10.0scarecrow-like protein 9
RefseqXP_015630944.10.0scarecrow-like protein 9
RefseqXP_025880243.10.0scarecrow-like protein 9
RefseqXP_025880244.10.0scarecrow-like protein 9
RefseqXP_025880245.10.0scarecrow-like protein 9
TrEMBLA0A0E0GS520.0A0A0E0GS52_ORYNI; Uncharacterized protein
STRINGONIVA03G31510.30.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein