PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G30250.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 310aa    MW: 32740.2 Da    PI: 5.1837
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G30250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.91.2e-15161206555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR++iN++f eL  ++Pk+     kK++Ka+iL  A  YI++Lq
  ONIVA03G30250.1 161 HVVAERKRREKINQRFMELSAVIPKL-----KKMDKATILSDAASYIRELQ 206
                      8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.355156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-19160217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-18160222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.49E-17161210No hitNo description
PfamPF000104.1E-13161206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-16162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDDSSLFLQW AVSTLQHQHP AAVAVVADDD ATFFSFQELC DAEEVVVVPV QEEVITEAHG  60
GGASRIGLAV AVDEHGGWSR SPNPGARPPS GGCGSNNLPL MSWDFSAASV AVQVQPNGGG  120
GGGAPEMAYG SPLAAGGSTT RKTSAPTVAA AAAAAYAQLE HVVAERKRRE KINQRFMELS  180
AVIPKLKKMD KATILSDAAS YIRELQEKLK ALEEQAAARV TEAAMATPSP ARAMNHLPVP  240
PEIEVRCSPT NNVVMVRIHC ENGEGVIVRI LADVEEIHLR IINANVMPFL DQGATMIITI  300
AAKASSSLLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13159215763Transcription factor MYC2
5gnj_B1e-13159215763Transcription factor MYC2
5gnj_E1e-13159215763Transcription factor MYC2
5gnj_F1e-13159215763Transcription factor MYC2
5gnj_G1e-13159215763Transcription factor MYC2
5gnj_I1e-13159215763Transcription factor MYC2
5gnj_M1e-13159215763Transcription factor MYC2
5gnj_N1e-13159215763Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164169ERKRRE
2165170RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880235.11e-156LOW QUALITY PROTEIN: transcription factor NAI1
TrEMBLA0A0E0GRM60.0A0A0E0GRM6_ORYNI; Uncharacterized protein
STRINGONIVA03G30250.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.23e-24bHLH family protein