PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G28270.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 456aa    MW: 48367.2 Da    PI: 6.9712
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G28270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.96.5e-17326372455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  ONIVA03G28270.1 326 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 372
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-21320384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.05E-17325376No hitNo description
PfamPF000103.2E-14326372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-21326380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-18328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MNQFVPDWSN MGDASRTLGE DDNLIELLWC NGHVVMQSQN HHRKLPPRPP EKAAAAAAAA  60
AVQEDEAGLW FPFALADSLE KDIFSDLFYE APVAATAAAA PAGPGAGADG EGKTCKGDAA  120
MAEEERGGPG AASEAPRELM PPPKSTHASC SRQQTMSLAD GGDNAGDLSE LVRARRSSGG  180
AVRRKAEAGG GGGGASSSML SAIGSSICGS NQVQVQQRTA SEPGRRGAPP SAVGSANAIP  240
CGGRDHGHGH EATTVASSSG RSNCCFGTNT TTEPTSTSNR SSKRKRLDTT EDSESPSEDA  300
ESESAALARK PPAKMTTARR SRAAEVHNLS ERRRRDRINE KMRALQELIP HCNKTDKASM  360
LDEAIEYLKS LQLQLQMMWM GSGMAPPVMF PGVHQYLPRM GVGMGAAAAA MPRMPEWGII  420
RWGPRPCSSS KIHHFTCQME ALCLLLKMHP TQDQDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1330335ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605050.0AK060505.1 Oryza sativa Japonica Group cDNA clone:001-018-H11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880141.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
TrEMBLA0A0E0GQX50.0A0A0E0GQX5_ORYNI; Uncharacterized protein
STRINGONIVA03G28270.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-33phytochrome interacting factor 3