PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G27200.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 328aa MW: 34571.9 Da PI: 7.1341

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G27200.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	38.5	3.4e-12	3	127	3	126
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvkaeek....ewyfFskrdkkyatgkrknratksgyW 83 G+ F+P d+el++++L++k+++++++l +i+++d+y++ P dL + + + +yfF++ ++ g ++r ONIVA03G27200.1 3 GGLTFSPPDHELITKFLRPKIADDTIKL-PFIHDADVYSAAPPDLAArhvpargtdRGD---GagavYYYFFCPVHRGGG-GVGARRR------ 85 699**********************9.88************84466665443111...123235588888877544.3333332...... PP NAM 84 katgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmhey 126 + +vl+++g+ vg + L + +g+ ++ ++ W+m e+ ONIVA03G27200.1 86 ----QRAAVLDAGGRRVGHLRRLSYGvreRGSGRRLTRLGWCMTEF 127 ....345666667777777777777655456666666777777777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	18.048	1	152	IPR003441	NAC domain
SuperFamily	SSF101941	2.09E-23	3	152	IPR003441	NAC domain
Pfam	PF02365	1.8E-7	4	128	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MAGGLTFSPP DHELITKFLR PKIADDTIKL PFIHDADVYS AAPPDLAARH VPARGTDRGD 60 GAGAVYYYFF CPVHRGGGGV GARRRQRAAV LDAGGRRVGH LRRLSYGVRE RGSGRRLTRL 120 GWCMTEFGVD HGGGGGGEAD AGGLVLCKMY RSPRAAQVEA RLQAAAASTS GSKRKQAADD 180 LIHAPASSRH RHADVMPAGV DGDEVGSIHP SVQFPPPPEE QTLVQTRDGP RTDHEVIMAL 240 AMGATVDELL GPKHGEPGES SPFPAPAAEP CSISGGGDIF WTASGVVPCP DMAMAFPAPP 300 AGEFSWDKEL AWIRELLSGS RPSSCSAV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC107206	0.0	AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0GQJ5	0.0	A0A0E0GQJ5_ORYNI; Uncharacterized protein
STRING	ONIVA03G27200.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4363	21	58