PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA03G26170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 486aa MW: 52478.5 Da PI: 3.9112 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 83.8 | 3.4e-26 | 7 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dke 91 l pG+rF+P+d+elv++yL +++++k+l+l+ vi ++d ++v Pw+L + +++ +e +fF++++ k+ +gkr++r + g+W+ + d e ONIVA03G26170.1 7 LLPGLRFDPSDDELVSRYLLRRIQQKPLPLDGVIVDADPLSVPPWTLLAD-HTRGDEAFFFAEARAKNGKGKRQKRtVEGGGFWQGQRMavDGE 99 579***************************999**************743.456789*******************555599**9665522222 PP NAM 92 vlsk..........kgel.....vglkktLvfykgrapkgektdWvmheyrl 128 + + ++ k +L f+ ++ ++g ++ Wvmhey++ ONIVA03G26170.1 100 R--LvvpgddggggG--DegleiTWRKYVLSFF-AEGERG-SSGWVMHEYAV 145 2..133456666550..155565899999****.444454.89*******86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-32 | 4 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.067 | 7 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-16 | 9 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 486 aa Download sequence Send to blast |
MAGADGLLPG LRFDPSDDEL VSRYLLRRIQ QKPLPLDGVI VDADPLSVPP WTLLADHTRG 60 DEAFFFAEAR AKNGKGKRQK RTVEGGGFWQ GQRMAVDGER LVVPGDDGGG GGDEGLEITW 120 RKYVLSFFAE GERGSSGWVM HEYAVTSPAD LASSQLRLYR VRFSGHGKKR KREPQCLDSH 180 DDDDGGDQES ATHRRAVAET TLFDGYVPRP AADGTDQGTY GVIDGESSLA SHCLPDQIVP 240 PAEEADATAG VENPLLDEER WSPPQPALVK QNSYDLMAIS SLLFSDLPDR IDDDDLSVSQ 300 TEGTELSEQG SSGVIDDDYW READATGGAE REEIALLDEE RCPQPQPAPP TAALVPPLQG 360 QSSYDLMADS SLLFADLPGS IDDDELQRSL RASDMPDQFL AQTEEAGAGG GGGAAAALNK 420 QSNSSPLGVE VPMALSDLES PESMPLSDLE FPESIDEVLS YIDFTTDDTS CLDFDMDELF 480 SDMPAD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630217.1 | 0.0 | NAC domain-containing protein 82 | ||||
TrEMBL | A0A0E0GQ72 | 0.0 | A0A0E0GQ72_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G26170.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP802 | 22 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G39820.1 | 6e-14 | NAC domain containing protein 94 |