PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G26150.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 464aa    MW: 49701.5 Da    PI: 3.8811
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G26150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.81.2e-2471481128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dke 91 
                      lppG+rF+P+d+elv++yL +++++k+l+l+ vi ++d ++v Pw+   + +++ +e +fF+ ++ k+ +gkr++r +   g+W+ +    d e
  ONIVA03G26150.1   7 LPPGLRFDPSDDELVSRYLLRRIQQKPLPLDGVIVDADPLSVPPWTPL-ADHTRGDEAFFFAGARAKNGKGKRQKRtVEGGGFWQGQRMavDGE 99 
                      79****************************999************953.33456789*******************555599**9665522222 PP

              NAM  92 vlsk........kgel..........vglkktLvfykgrapkgektdWvmheyrl 128
                                  +  +          ++ k +L f+  + ++g ++ Wvmhey++
  ONIVA03G26150.1 100 R--LvvpgngggG--VdgsggsgleiTWRKYVLSFFA-EGEQG-SSGWVMHEYAV 148
                      2..1234566540..1555666667699999*****3.44443.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-304166IPR003441NAC domain
PROSITE profilePS5100527.9157167IPR003441NAC domain
PfamPF023653.8E-168147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MAGADGLPPG LRFDPSDDEL VSRYLLRRIQ QKPLPLDGVI VDADPLSVPP WTPLADHTRG  60
DEAFFFAGAR AKNGKGKRQK RTVEGGGFWQ GQRMAVDGER LVVPGNGGGG VDGSGGSGLE  120
ITWRKYVLSF FAEGEQGSSG WVMHEYAVTS SADLASSPLR LYRVQKRKRE PQCLDSHDDE  180
DGGDQERAAP RRGVALPAAD GTDQGSYGVI DGEPSLVSHC LPDQIVPPAE EADATAGAVD  240
EESWSPPQPA SPTAALVKQN SYDLMVISSL LFSDLPDRID DDDLSVSQTE GTELSEQGSS  300
GVIDDDYWRE ADATGGAERE EIALLDEERC PQPQPAPPTD ALVPPLQGQN SYDVMADSSL  360
LFADLPGRID DDELQRSLRV SDMPDLFLSQ TEEAGAGGGG GAAPVLNKQS NSSPLGVMDS  420
EVPIVLSDLE FPESIDEVLS YIDFATDDCL DFDMDELFSD MPAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630217.10.0NAC domain-containing protein 82
TrEMBLA0A0E0GQ700.0A0A0E0GQ70_ORYNI; Uncharacterized protein
STRINGONIVA03G26150.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.25e-13NAC domain containing protein 41