PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G24370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 204aa MW: 21083.2 Da PI: 8.0868 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.6 | 2.5e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ +l++++a+pe +r+++++sl+yeA r+ +Pv+Gavg+++++++ l+q ONIVA03G24370.1 2 SCNGCRVLRKGCSDGCVLRPCLqwidaADAQGHATVFVAKFFGRAGLLSFISAVPEAQRPALFQSLLYEAAGRTINPVHGAVGLLWTGNWPLCQ 95 6*********************9998656778************************************************************** PP DUF260 90 lkaelall 97 +++e++l+ ONIVA03G24370.1 96 AAVETVLR 103 **999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.212 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-25 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0060776 | Biological Process | simple leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDGCVLR PCLQWIDAAD AQGHATVFVA KFFGRAGLLS FISAVPEAQR 60 PALFQSLLYE AAGRTINPVH GAVGLLWTGN WPLCQAAVET VLRGGAIGPL PELGGACGGA 120 GGDLYGAAKR NGGWSTFSTA KRVRKAEVPE APSCDLGLCL SPCSPPAVGE RKPALRPGTP 180 SMSSDESGTT TGGERDPVLL NLFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071624 | 0.0 | AK071624.1 Oryza sativa Japonica Group cDNA clone:J023106M18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629353.1 | 1e-144 | LOB domain-containing protein 37 | ||||
Swissprot | Q9FN11 | 9e-69 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A0E0GPI3 | 1e-144 | A0A0E0GPI3_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2XIF2 | 1e-144 | A2XIF2_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA03G24370.1 | 1e-145 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 8e-70 | LOB domain-containing protein 37 |
Publications ? help Back to Top | |||
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