PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G23070.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 523aa    MW: 54040.7 Da    PI: 6.6528
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G23070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS181.84.8e-561345202374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn......sseelaal.kl.... 83 
                      ++lL  cA av++g+l+++q+l   l el s +gd+++Rlaa+ ++ALa+ l    ++  ++a+++ + se+                +l    
  ONIVA03G23070.1 134 EQLLNPCAVAVEAGNLSRVQHLFYVLGELESFSGDANHRLAAHGLRALARWLPAaVGPAAAAAVRVPPCSERPtpafaaA------EpRLfras 221
                      689*************************************************9867777777776555554443334321......22112335 PP

             GRAS  84 ...fsevsPilkfshltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg........skeel 158
                         f+evsP++ + + +aN aI +a          + +H++D+++s+G+QWp+Ll++L+ +p  +  ps+R+T+vg+ ++          +   
  ONIVA03G23070.1 222 lirFHEVSPWFALPNALANAAIAQASTCGaagatpRPLHVVDLGVSHGVQWPTLLESLTRQPggRALPSVRLTVVGPGATAtspaapfsASPPG 315
                      589*********************96533345567889************************544579********987778899999878888 PP

             GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.....ad 247
                            L ++A++++++++++   a++l+d        + gEal+V+l+++l +        ++er+evL+  ++l+P++vv++e +     + 
  ONIVA03G23070.1 316 YDFSPHLLRYAKSINLDLRISR--ASTLDDA----VPGDDGEALVVCLQFRLGHAA------AEERREVLRKARGLNPELVVLSELDsgvgvVG 397
                      99999****************8..6777776....66789**********999997......445899******************94433222 PP

             GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                       +++  + +f+  le  + +++s++a +    + + + Er+ll+ e+  ++a++  +  +  e  e Wrer+ +aGF+++p++ +a+++a++ll
  ONIVA03G23070.1 398 GDGGIAAGEFAARLELLWRFLESTSAAF----KGKDVEERRLLEAEAGAILAAADVA--AAGEGREGWRERMAAAGFEEAPFGAEAVESARSLL 485
                      234467889***************9997....6777788888888899999998887..788999***************************** PP

             GRAS 342 rkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                      rk++ +++++  +  +++v l Wk++p+ ++S Wr
  ONIVA03G23070.1 486 RKYDsGWEMSAPSPAAAAVaLRWKGQPVSFCSLWR 520
                      ****6555666666666667**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.248107498IPR005202Transcription factor GRAS
PfamPF035141.7E-53134520IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MSYHGQERHG GNGLDWFEES MSSLLAADVD LAGGGGDAGG GGYAWWWAAS PAAQQDDIGS  60
VVAQTLSPPS TAAPAAASPS IASPAASSPP DVPSSSSKKR KSPAHRAPGH TGGKKGGGGK  120
GGGGGSDRDM RWAEQLLNPC AVAVEAGNLS RVQHLFYVLG ELESFSGDAN HRLAAHGLRA  180
LARWLPAAVG PAAAAAVRVP PCSERPTPAF AAAEPRLFRA SLIRFHEVSP WFALPNALAN  240
AAIAQASTCG AAGATPRPLH VVDLGVSHGV QWPTLLESLT RQPGGRALPS VRLTVVGPGA  300
TATSPAAPFS ASPPGYDFSP HLLRYAKSIN LDLRISRAST LDDAVPGDDG EALVVCLQFR  360
LGHAAAEERR EVLRKARGLN PELVVLSELD SGVGVVGGDG GIAAGEFAAR LELLWRFLES  420
TSAAFKGKDV EERRLLEAEA GAILAAADVA AAGEGREGWR ERMAAAGFEE APFGAEAVES  480
ARSLLRKYDS GWEMSAPSPA AAAVALRWKG QPVSFCSLWR PAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B2e-2413152231421Protein SHORT-ROOT
5b3h_E2e-2413152231421Protein SHORT-ROOT
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110125TGGKKGGGGKGGGGGS
2117124GGKGGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629536.10.0nodulation-signaling pathway 1 protein
TrEMBLA0A0E0GP210.0A0A0E0GP21_ORYNI; Uncharacterized protein
STRINGONIVA03G23070.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.17e-52GRAS family protein