PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G21780.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 424aa    MW: 46767.9 Da    PI: 6.1892
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G21780.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000273734121054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +rRR+ri +  + Lr+++P      +k  +  ++L +A+ Y+k+L
  ONIVA03G21780.2 373 KRRRERIQETVAALRKIVPGG---IAK--DATAVLDEAICYLKYL 412
                      9******************97...333..3458999999999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.597363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-6373419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-6373420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00148373417No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MRWLALSVDI FRKGISLNLY CRSLKFGIED LVAGIAVWVS VVAWQFFQGE RAGVLMVWQP  60
VAQTRFRVFK HENGIAVRVI ACFQPSQDCQ AEYFRHLLKP KILFAGCFLM GEKVNPWCHW  120
SNPPWTESSA NNLHPPDVSL DNTNSVALPT YLNSDGYIYS GVAASMPSIA ASVTDRPVSF  180
SSRFVTTLVP SVGLSTAETL RKRPLVFFHN VNNTFTVGPL LSKGTLDTVP ELQGSNETNV  240
TDVGAQNTEC MHENTEEIDA LLCSDSDEGC LKVQELNNRV RKYPMQNDTM SVESVASAGA  300
SQPAKKRRLS SGTDRSVVDT ASSARPDHSV DQKHLSHDDD AQSCCIGEVE SDHQFALREG  360
EEAEGDDGPD DRKRRRERIQ ETVAALRKIV PGGIAKDATA VLDEAICYLK YLKLKVKTLG  420
AVSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371375RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0993230.0AC099323.6 Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631787.10.0transcription factor PIF4
TrEMBLA0A0D9Z8E10.0A0A0D9Z8E1_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9Z8E20.0A0A0D9Z8E2_9ORYZ; Uncharacterized protein
STRINGOGLUM03G20780.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100311820