PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G21780.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 373aa MW: 41151.4 Da PI: 5.2844

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G21780.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.7	0.00023	322	361	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +rRR+ri + + Lr+++P +k + ++L +A+ Y+k+L ONIVA03G21780.1 322 KRRRERIQETVAALRKIVPGG---IAK--DATAVLDEAICYLKYL 361 9******************97...333..3458999999999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.597	312	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00123	322	366	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-6	322	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-6	322	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MRWLALSVDI FRKGISLNLY CRSLKFGIED LVAGIAVWVS VVAWQFFQGE RAGVLMVWQP 60 VAQTRFRVFK HENGIAVRVI ACFQPSQDCQ AEYFRHLLKP KILFAGCFLM GEKVNPWCHW 120 SNPPWTESSA NNLHPPDVSL DNTNSVALPT YLNSDGYIYS GVAASMPSIA ASGTLDTVPE 180 LQGSNETNVT DVGAQNTECM HENTEEIDAL LCSDSDEGCL KVQELNNRVR KYPMQNDTMS 240 VESVASAGAS QPAKKRRLSS GTDRSVVDTA SSARPDHSVD QKHLSHDDDA QSCCIGEVES 300 DHQFALREGE EAEGDDGPDD RKRRRERIQE TVAALRKIVP GGIAKDATAV LDEAICYLKY 360 LKLKVKTLGA VSL

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MRWLALSVDI FRKGISLNLY CRSLKFGIED LVAGIAVWVS VVAWQFFQGE RAGVLMVWQP  60
VAQTRFRVFK HENGIAVRVI ACFQPSQDCQ AEYFRHLLKP KILFAGCFLM GEKVNPWCHW  120
SNPPWTESSA NNLHPPDVSL DNTNSVALPT YLNSDGYIYS GVAASMPSIA ASGTLDTVPE  180
LQGSNETNVT DVGAQNTECM HENTEEIDAL LCSDSDEGCL KVQELNNRVR KYPMQNDTMS  240
VESVASAGAS QPAKKRRLSS GTDRSVVDTA SSARPDHSVD QKHLSHDDDA QSCCIGEVES  300
DHQFALREGE EAEGDDGPDD RKRRRERIQE TVAALRKIVP GGIAKDATAV LDEAICYLKY  360
LKLKVKTLGA VSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	320	324	RKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC099323	0.0	AC099323.6 Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence.
GenBank	AK065674	0.0	AK065674.1 Oryza sativa Japonica Group cDNA clone:J013036B10, full insert sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631787.1	0.0	transcription factor PIF4
TrEMBL	A0A0D9Z8E0	0.0	A0A0D9Z8E0_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0GNL3	0.0	A0A0E0GNL3_ORYNI; Uncharacterized protein
STRING	ORUFI03G20760.1	0.0	(Oryza rufipogon)
STRING	ONIVA03G21780.2	0.0	(Oryza nivara)
STRING	OBART03G20100.1	0.0	(Oryza barthii)