PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G20840.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 236aa    MW: 25347.7 Da    PI: 6.8057
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G20840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08156196954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  ONIVA03G20840.1 156 ARLRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 196
                      699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.421147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-13148207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14151207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-13153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-5157196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.92E-6170201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDFDLFNSYP ESQLDLMSTM LQLEQLTALS DQSLFMAAPT SPPVSPMGTP SPQFSPPPQM  60
SVTTTTAGGG YQDQYNSMPA TYGAGAGVHQ LDFAMSSPGS DSGAPQGSSS SSSSEAMREM  120
IFHIAALQPV EIDPEAVRPP KRRNVRISKD PQSVAARLRR ERISERIRIL QRLVPGGTKM  180
DTASMLDEAI HYVKFLKSQV QSLERAAAAT GAAAHRAAAF GAAYPAALPM QHHAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142RPPKRR
2156161RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0604770.0AK060477.1 Oryza sativa Japonica Group cDNA clone:001-012-F09, full insert sequence.
GenBankAK0704580.0AK070458.1 Oryza sativa Japonica Group cDNA clone:J023048E05, full insert sequence.
GenBankAP0056550.0AP005655.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0025H07.
GenBankAP0060570.0AP006057.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1342C04.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610996.11e-172transcription factor HEC2
TrEMBLA0A0E0GN981e-171A0A0E0GN98_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QSB71e-171A0A0E0QSB7_ORYRU; Uncharacterized protein
TrEMBLA2Z2001e-171A2Z200_ORYSI; Uncharacterized protein
TrEMBLI1QPI61e-171I1QPI6_ORYGL; Uncharacterized protein
TrEMBLQ67TR81e-171Q67TR8_ORYSJ; Basic helix-loop-helix (BHLH)-like protein
STRINGORUFI09G13650.11e-171(Oryza rufipogon)
STRINGOS09T0455300-011e-171(Oryza sativa)
STRINGONIVA03G20840.11e-171(Oryza nivara)
STRINGORGLA09G0096500.11e-171(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.14e-39bHLH family protein