PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G20760.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 302aa    MW: 32777.9 Da    PI: 9.7194
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G20760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.32.1e-32311232103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+++++e+++++e+isw ++g+sfvv+++ efa+++Lp +Fkh nf+SFvRQLn+YgF+kv  ++         weF++ +F++g++ ll+
  ONIVA03G20760.1  31 FLTKTHQMVEESATDEVISWGKEGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANGNFRRGEQGLLS 115
                      9*****************************************************************99.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                       i+r+k +
  ONIVA03G20760.1 116 GIRRRKAT 123
                      *****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-3526114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5427120IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.2E-3227120IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.1E-173154IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.0E-2931120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-176981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-178294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAAAEAAAAV GKQQQKGGGG RGGGGGGPAP FLTKTHQMVE ESATDEVISW GKEGRSFVVW  60
KPVEFARDLL PLHFKHCNFS SFVRQLNTYG FRKVVPDRWE FANGNFRRGE QGLLSGIRRR  120
KATTPQSSKS CGSGVNVAFP PPLPPLPPAP SATTSSGNDR SSSSASSPPR ADITSENEQL  180
RKDNQTLTTE LARARRHCEE LLAFLSRFLD VRQLDLRLLM QEDMRAAAGG VGGEQREQEH  240
AREEKCVKLF GVLLDDTHGA ATRKRARCEE AAASERPIKM IRIGEPWVSV PSSGPARCGG  300
DN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B9e-21311245109Heat shock factor protein 2
5d8l_B9e-21311245109Heat shock factor protein 2
5d8l_D9e-21311245109Heat shock factor protein 2
5d8l_F9e-21311245109Heat shock factor protein 2
5d8l_H9e-21311245109Heat shock factor protein 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11826GGRGGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0614330.0AK061433.1 Oryza sativa Japonica Group cDNA clone:006-307-A01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611859.10.0heat stress transcription factor B-1
SwissprotQ67TP90.0HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLA0A0E0GN900.0A0A0E0GN90_ORYNI; Uncharacterized protein
STRINGONIVA03G20760.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.13e-51heat shock factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]