PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA03G19590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 198aa MW: 22582.6 Da PI: 10.1141 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.1 | 8.5e-13 | 58 | 110 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 +WT+eEd l+++ ++ G ++W+++a+ m +R++ qc++rw+++l ONIVA03G19590.1 58 AWTPEEDACLARLAAENGFRHWRRVAESMAaarsgrrPRRSPGQCRDRWRDHL 110 7*************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.674 | 51 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-10 | 55 | 112 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.87E-11 | 57 | 142 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-12 | 58 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-12 | 58 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.62E-5 | 58 | 110 | No hit | No description |
SuperFamily | SSF46689 | 9.72E-10 | 111 | 178 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-4 | 113 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 5.935 | 123 | 177 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
MEKKIDVIAM ELQGLEQEAA VQPPASAAFP SSAEEAAAAA SPTSGGKRIV LRIRLPPAWT 60 PEEDACLARL AAENGFRHWR RVAESMAAAR SGRRPRRSPG QCRDRWRDHL ARDCRDRWRD 120 HLARDVYHRP FTADDDAELA RLLLKRDGDG ERSWKDISRA AYCRTSRGMR RRWGELRDSD 180 AFLRKLWCPP PPPMQPSC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006645625.1 | 5e-55 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | A0A0E0GMT8 | 1e-138 | A0A0E0GMT8_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G19590.1 | 1e-138 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8360 | 13 | 46 |