PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G17050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 428aa MW: 46656.7 Da PI: 6.6151 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.6 | 3.2e-34 | 216 | 270 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fv+av++LGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+ ONIVA03G17050.1 216 KQRMRWTPELHESFVHAVNKLGGSEKATPKGVLKLMKVDGLTIYHVKSHLQKYRT 270 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.835 | 213 | 273 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.94E-18 | 214 | 270 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-31 | 214 | 272 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-25 | 216 | 270 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.8E-10 | 218 | 269 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.7E-25 | 299 | 346 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0055063 | Biological Process | sulfate ion homeostasis | ||||
GO:0071486 | Biological Process | cellular response to high light intensity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MSSSLPILPK SLKDIPRSHN TQNILMPGQL PNDSMPLHQS ATQSSISHPR ASVVRSSYSA 60 MLGYAANPID SVSSHEGHFM AAPFISQSSN AEMLQSLCNN NTHGGHTVPT FFPAPACGAP 120 DYMDTITVPD NHTQSGSSTV TSDAAKQNEW WADIMNDDWK DILDATATDS QSKSMAQPSN 180 SAASQPAFNQ STSSHSGDIC PVTSPPPNNS NASASKQRMR WTPELHESFV HAVNKLGGSE 240 KATPKGVLKL MKVDGLTIYH VKSHLQKYRT ARYKPDLSEG KTQEGKTTDE LSLDLKASMD 300 LTEALRLQME VQKRLHEQLE IQRKLQLRIE EQGKYLQKMF EKQCKSSTQS VQDPSSGDTA 360 TPSEPSNSVD KDSEAALDPN RIGDNHPKNS TNVGANLKTA ATESPDSPVI ATDGSELPQE 420 KRRRVHES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-30 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-30 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-30 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-30 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-30 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-30 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-30 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-30 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 420 | 424 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250|UniProtKB:Q10LZ1}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063486 | 0.0 | AK063486.1 Oryza sativa Japonica Group cDNA clone:001-116-C05, full insert sequence. | |||
GenBank | AK109510 | 0.0 | AK109510.1 Oryza sativa Japonica Group cDNA clone:002-104-D09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632603.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 | ||||
Swissprot | B8ANX9 | 0.0 | PHR1_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 1 | ||||
TrEMBL | A0A0E0GLV9 | 0.0 | A0A0E0GLV9_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G17050.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1971 | 37 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 3e-68 | phosphate starvation response 1 |