PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G16680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | EIL | ||||||||
Protein Properties | Length: 640aa MW: 70719.3 Da PI: 4.7882 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 510.1 | 1.1e-155 | 78 | 464 | 1 | 354 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaa..tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLr 92 eel++rmw+d+m+lkrlke ++++ +d + +k ++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+Lr ONIVA03G16680.1 78 EELERRMWRDRMKLKRLKELQLSRGKDPAGGvvGDPSKPRQSQEQARRKKMSRAQDGILKYMLKMMEVCRAQGFVYGIIPEKGKPVSGASDNLR 171 8*********************9885555448788999******************************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT- CS EIN3 93 aWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelgl 186 +WWkekv+fdrngpaai+kyqa+n++++ es+l + ++ ++hsl+elqDTtlgSLLsalmqhcdppqrr+plekgv+pPWWPtG+e+ww+elg+ ONIVA03G16680.1 172 GWWKEKVRFDRNGPAAIAKYQADNAVPGCESELAS-GTGSPHSLQELQDTTLGSLLSALMQHCDPPQRRYPLEKGVPPPWWPTGDEEWWPELGI 264 *********************************66.********************************************************** PP -TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX.....XXXXXXXXXX CS EIN3 187 skdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss.....slrkqspkvt 275 +kdqg+ppykkphdlkkawkvsvLtavikhmsp+ie+ir+l+rqsk+lqdkm+ake ++l+v++qee+++ ++ + + +++ +++ ONIVA03G16680.1 265 PKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIEKIRRLVRQSKCLQDKMTAKEISTWLAVVKQEEELYLKLNPGARppaptGGITSAISFN 358 ****************************************************************************944345442233556666 PP XXXXXXXXXXXXXXXX.XXXXXXXXXX.............................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXX CS EIN3 276 lsceqkedvegkkeskikhvqavktta.............................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsete 340 +s++ ++dv++ ++ k ++ ++k+ ++++++kr + +e++ + +++v +tc++ q+++s++ ONIVA03G16680.1 359 ASSS-EYDVDVVDDCKGDEAGNQKAVVvadptafnlgaamlndkflmpasmkeeatDVEFIQKRSASGAEPELMLNNRV-YTCNNVQCPHSDYG 450 6655.99***77777777777777766888888*****************************************99976.************** PP XXXXXXXXXXXXXX CS EIN3 341 lifadknsisqney 354 +f d+n++++++y ONIVA03G16680.1 451 YGFLDRNARNSHQY 464 ************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 1.3E-131 | 78 | 332 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 2.0E-74 | 207 | 340 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 2.09E-61 | 211 | 335 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0071281 | Biological Process | cellular response to iron ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 640 aa Download sequence Send to blast |
MGGGLVMDQG MMFPGVHNFV DLLQQNGGDK NLGFGALVPQ TSSGEQCVMG EGDLVDPPPE 60 SFPDAGEDDS DDDVEDIEEL ERRMWRDRMK LKRLKELQLS RGKDPAGGVV GDPSKPRQSQ 120 EQARRKKMSR AQDGILKYML KMMEVCRAQG FVYGIIPEKG KPVSGASDNL RGWWKEKVRF 180 DRNGPAAIAK YQADNAVPGC ESELASGTGS PHSLQELQDT TLGSLLSALM QHCDPPQRRY 240 PLEKGVPPPW WPTGDEEWWP ELGIPKDQGP PPYKKPHDLK KAWKVSVLTA VIKHMSPDIE 300 KIRRLVRQSK CLQDKMTAKE ISTWLAVVKQ EEELYLKLNP GARPPAPTGG ITSAISFNAS 360 SSEYDVDVVD DCKGDEAGNQ KAVVVADPTA FNLGAAMLND KFLMPASMKE EATDVEFIQK 420 RSASGAEPEL MLNNRVYTCN NVQCPHSDYG YGFLDRNARN SHQYTCKYND PLQQSTENKP 480 SPPAIFPATY NTPNQALNNL DFGLPMDGQR SITELMNMYD NNFVANKNLS NDSATIMERP 540 NAVNPRIQIE EGFFGQGSGI GGSNGGVFED VNGMMQQPQQ TTPAQQQFFI RDDTPFGNQM 600 GDINGASEFR FGSGFNMSGA VEYPGAMQGQ QKNDGSNWYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 6e-74 | 209 | 340 | 1 | 132 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 6e-74 | 209 | 340 | 1 | 132 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator in the ethylene response pathway (PubMed:16786297, PubMed:28829777, PubMed:27701783, PubMed:25995326). Required for the inhibition of root growth by ethylene in etiolated seedlings (PubMed:25995326, PubMed:28829777). Functions upstream of the auxin biosynthetic gene YUCCA8 and directly activates its expression (PubMed:28829777). Functions downstream of the ethylene signaling factor EIN2 in disease resistance against the rice blast fungus (Magnaporthe oryzae) (PubMed:27701783). Binds directly to the promoters of the NADPH oxidases RBOHA and RBOHB, and the jasmonate biosynthetic gene OPR4 to activate their expression during fungal infection (PubMed:27701783). May enhance disease resistance by facilitating reactive oxygen species (ROS) generation and jasmonate biosynthesis with subsequent phytoalexin accumulation during Magnaporthe oryzae infection (PubMed:27701783). Acts as negative regulator of salt tolerance (PubMed:25995326). During salt stress, activates the cation transporter HKT1, which mediates increased sodium uptake in roots, and contributes to sodium accumulation and salt toxicity (PubMed:25995326). Binds directly to the DNA sequence 5'-TGTTACAAATACC-3' in the promoter of the GA20OX2 gene to activate its expression at the transcriptional level during ethylene signaling (PubMed:30002253). Possesses transactivation activity in protoplasts (PubMed:25995326). {ECO:0000269|PubMed:16786297, ECO:0000269|PubMed:25995326, ECO:0000269|PubMed:27701783, ECO:0000269|PubMed:28829777, ECO:0000269|PubMed:30002253}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00367 | DAP | Transfer from AT3G20770 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by infection with the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:27701783}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629858.1 | 0.0 | ETHYLENE INSENSITIVE 3-like 1 protein | ||||
Swissprot | Q10M41 | 0.0 | EIL1A_ORYSJ; Protein ETHYLENE-INSENSITIVE 3-like 1a | ||||
TrEMBL | A0A0E0GLS0 | 0.0 | A0A0E0GLS0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G16680.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP638 | 38 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20770.1 | 1e-166 | EIL family protein |
Publications ? help Back to Top | |||
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